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Oxidative phosphorylation

SourceIDPathway
PathWhizPW002461 ThumbThumb?image type=greyscaleThumb?image type=simple
KEGG00190 Map00190

Pathway Metabolites

YMDB ID Name
CAS Number
IUPAC Name Formula
Weight
Structure
YMDB00041Heme
14875-96-8
C34H32FeN4O4
616.487
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YMDB00085Flavin Mononucleotide
146-17-8
{[(2R,3S,4S)-5-{7,8-dimethyl-2,4-dioxo-2H,3H,4H,10H-benzo[g]pteridin-10-yl}-2,3,4-trihydroxypentyl]oxy}phosphonic acidC17H21N4O9P
456.3438
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YMDB00088Ubiquinone Q1
727-81-1
2,3-dimethoxy-5-methyl-6-(3-methylbut-2-en-1-yl)cyclohexa-2,5-diene-1,4-dioneC14H18O4
250.2903
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YMDB00101Fumaric acid
110-17-8
(2E)-but-2-enedioic acidC4H4O4
116.0722
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YMDB00109Adenosine triphosphate
56-65-5
({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acidC10H16N5O13P3
507.181
Thumb
YMDB00110NAD
53-84-9
1-[(2R,3R,4S,5R)-5-[({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-3,4-dihydroxyoxolan-2-yl]-3-carbamoyl-1lambda5-pyridin-1-yliumC21H28N7O14P2
664.433
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YMDB00143NADH
58-68-4
[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2R,3S,4R,5R)-5-(3-carbamoyl-1,4-dihydropyridin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy})phosphinic acidC21H29N7O14P2
665.441
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YMDB00207Copper(2+)
15158-11-9
copper(2+) ionCu
63.546
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YMDB00219Pyrophosphate
14000-31-8
(phosphonooxy)phosphonic acidH4O7P2
177.9751
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YMDB00296FAD
146-14-5
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}[({[(2R,3S,4S)-5-{7,8-dimethyl-2,4-dioxo-2H,3H,4H,10H-benzo[g]pteridin-10-yl}-2,3,4-trihydroxypentyl]oxy}(hydroxy)phosphoryl)oxy]phosphinic acidC27H33N9O15P2
785.5497
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YMDB00338Succinic acid
110-15-6
butanedioic acidC4H6O4
118.088
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YMDB00412NAD(+)
53-84-9
C21H28N7O14P2
664.433
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YMDB00597FADH2
1910-41-4
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}[({[(2R,3S,4S)-5-{7,8-dimethyl-2,4-dioxo-1H,2H,3H,4H,5H,10H-benzo[g]pteridin-10-yl}-2,3,4-trihydroxypentyl]oxy}(hydroxy)phosphoryl)oxy]phosphinic acidC27H35N9O15P2
787.5656
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YMDB00844PPPi
10380-08-2
{[hydroxy(phosphonooxy)phosphoryl]oxy}phosphonic acidH5O10P3
257.955
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YMDB00862hydron
12408-02-5
hydronH
1.00794
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YMDB00890water
7732-18-5
waterH2O
18.0153
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YMDB00900oxygen
7782-44-7
oxidanoneO2
31.9988
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YMDB00902ubiquinol
56275-39-9
2,3-dimethoxy-5-methyl-6-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl]benzene-1,4-diolC49H78O4
731.1412
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YMDB00907phosphate
14265-44-2
phosphoric acidO4P
94.9714
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YMDB00914ADP
58-64-0
[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acidC10H15N5O10P2
427.2011
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YMDB00987Protoheme IX
14875-96-8
3-[(12Z)-20-(2-carboxyethyl)-10,15-diethenyl-5,9,14,19-tetramethyl-21,23,24,25-tetraaza-22-ferrahexacyclo[9.9.3.1³,⁶.1¹³,¹⁶.0⁸,²³.0¹⁸,²¹]pentacosa-1,3(25),4,6,8,10,12,14,16(24),17,19-undecaen-4-yl]propanoic acidC34H32FeN4O4
616.487
Thumb
YMDB01028dioxygen
7782-44-7
O2
31.9988
Thumb
YMDB01038fumarate(2-)
110-17-8
C4H2O4
114.0563
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YMDB16132Heme O3-[(11Z,16Z)-20-(2-carboxyethyl)-15-ethenyl-10-[(4E,8E)-1-hydroxy-5,9,13-trimethyltetradeca-4,8,12-trien-1-yl]-5,9,14,19-tetramethyl-21,23,24,25-tetraaza-22-ferrahexacyclo[9.9.3.1³,⁶.1¹³,¹⁶.0⁸,²³.0¹⁸,²¹]pentacosa-1(20),2,4,6(25),7,9,11,13(24),14,16,18-undecaen-4-yl]propanoic acidC49H58FeN4O5
838.854
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YMDB16248QH(2)2,3-dimethoxy-5-methyl-6-(3-methylbut-2-en-1-yl)benzene-1,4-diolC14H20O4
252.3062
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YMDB162502Fe-2Sbis(lambda2-iron(2+) ion) disulfane tetrasulfanideFe2H8S6
312.11
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YMDB162524Fe-4Stetrakis(lambda1-iron(1+) ion) tetrasulfane tetrasulfanideFe4H12S8
491.96
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YMDB16270Heme D3-[20-(2-carboxyethyl)-10,15-bis(carboxymethyl)-5,10,15,19-tetramethyl-9,14-dioxo-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1(20),2,4,6,8(23),11,13(22),16,18-nonaen-4-yl]propanoic acidC34H34N4O10
658.6546
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YMDB16282ferroheme b5,9-bis(2-carboxylatoethyl)-14,19-diethenyl-4,10,15,20-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1,3(24),4,6,8(23),9,11,13,15,17,19-undecaene-21,22-diide ironC34H30FeN4O4
614.485
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YMDB162833Fe-4S iron-sulfur clusterλ²-iron(2+) ion diiron tetrasulfanideFe3H4S4
299.81
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Pathway Proteins

Uniprot ID Gene Name
Locus
Name Type Metabolites
Q07500NDE2
YDL085W
External NADH-ubiquinone oxidoreductase 2, mitochondrialEnzyme
P40215NDE1
YMR145C
External NADH-ubiquinone oxidoreductase 1, mitochondrialEnzyme
P32340NDI1
YML120C
Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrialEnzyme
Q00711SDH1
YKL148C
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrialEnzyme
P47052
YJL045W
Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrialEnzyme
P21801SDH2
YLL041C
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrialEnzyme
P17255TFP1
V-type proton ATPase catalytic subunit AEnzyme
P05030PMA1
YGL008C
Plasma membrane ATPase 1Enzyme
P19657PMA2
YPL036W
Plasma membrane ATPase 2Enzyme
P00830ATP2
YJR121W
ATP synthase subunit beta, mitochondrialEnzyme
P28239PPA2
YMR267W
Inorganic pyrophosphatase, mitochondrialEnzyme
P00817IPP1
YBR011C
Inorganic pyrophosphataseEnzyme
P08067RIP1
YEL024W
Cytochrome b-c1 complex subunit Rieske, mitochondrialEnzyme
P10174COX7
YMR256C
Cytochrome c oxidase subunit 7Enzyme
P07255COX9
YDL067C
Cytochrome c oxidase subunit 7AEnzyme
P00410COX2
Q0250
Cytochrome c oxidase subunit 2Enzyme
P00424COX5A
YNL052W
Cytochrome c oxidase polypeptide 5A, mitochondrialEnzyme
P00425COX5B
YIL111W
Cytochrome c oxidase polypeptide 5B, mitochondrialEnzyme
P04039COX8
YLR395C
Cytochrome c oxidase polypeptide VIII, mitochondrialEnzyme
P00420COX3
Q0275
Cytochrome c oxidase subunit 3Enzyme
P00401COX1
Q0045
Cytochrome c oxidase subunit 1Enzyme