{"ymdb_id":"YMDB16322","created_at":"2016-09-12T18:36:07.000Z","updated_at":"2016-10-17T22:34:44.000Z","name":"di-trans, poly-cis-polyprenyl diphosphate (C80)","cas":null,"state":null,"melting_point":null,"description":null,"experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":null,"synthesis_reference":null,"chebi_id":null,"hmdb_id":null,"kegg_id":null,"pubchem_id":null,"cs_id":null,"foodb_id":null,"wikipedia_link":null,"biocyc_id":null,"iupac":"[(3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63-hexadecamethyltetrahexaconta-2,6,10,14,18,22,26,30,34,38,42,46,50,54,58,62-hexadecaen-1-yl phosphonato)oxy]phosphonate","traditional_iupac":"(3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63-hexadecamethyltetrahexaconta-2,6,10,14,18,22,26,30,34,38,42,46,50,54,58,62-hexadecaen-1-yl phosphonato)oxyphosphonate","logp":"25.19301863566666","pka":"3.2043406094078315","alogps_solubility":"2.97e-04 g/l","alogps_logp":"9.10","alogps_logs":"-6.65","acceptor_count":"5","donor_count":"0","rotatable_bond_count":"50","polar_surface_area":"121.78","refractivity":"402.79919999999976","polarizability":"161.90004043877033","formal_charge":"-3","physiological_charge":"-2","pka_strongest_basic":null,"pka_strongest_acidic":"1.7672186885241006","bioavailability":"0","number_of_rings":"0","rule_of_five":"0","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":[],"pathways":[{"name":"Terpenoid backbone biosynthesis","kegg_map_id":"00900"}],"growth_conditions":[],"references":[],"proteins":[{"created_at":"2011-05-27T03:20:29.000Z","updated_at":"2011-05-29T05:06:38.000Z","name":"Probable undecaprenyl pyrophosphate synthase","uniprot_id":"Q12063","uniprot_name":"UPPS_YEAST","enzyme":true,"transporter":false,"gene_name":"NUS1","num_residues":375,"molecular_weight":"42556.69922","theoretical_pi":"6.95","general_function":"Involved in transferase activity, transferring alkyl or aryl (other than methyl) groups","specific_function":"Generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP)","reactions":[{"id":2719,"direction":"\u003e","locations":"Endoplasmic reticulum membrane; Single-pass membrane protein (Potential). Lipid droplet. Nucleus membrane; Single-pass membrane protein (Potential)","altext":"(2E,6E)-farnesyl diphosphate + 8 isopentenyl diphosphate = 8 diphosphate + di-trans,octa-cis-undecaprenyl diphosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":14431,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006945","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"97-119","pdb_id":null,"cellular_location":"Endoplasmic reticulum membrane; Single-pass membrane protein (Potential). Lipid droplet. Nucleus membrane; Single-pass membrane protein (Potential)","genbank_gene_id":"X83276","genbank_protein_id":"1004302","gene_card_id":"NUS1","chromosome_location":"chromosome 4","locus":"YDL193W","synonyms":["UPP synthase","Di-trans,poly-cis-decaprenylcistransferase","Nuclear undecaprenyl pyrophosphate synthase 1","Undecaprenyl diphosphate synthase","UDS"],"enzyme_classes":["2.5.1.31"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" transferase activity, transferring alkyl or aryl (other than methyl) groups"},{"category":"Process","description":" Not Available"}],"pfams":[],"pathways":[{"name":"Terpenoid backbone biosynthesis","kegg_map_id":"00900"}],"gene_sequence":"ATGCCCACGATGATCAAAAAGGATGATAAAGCAATGGAGCCCCCTAATGAAAAACCGCATAGAAAGATCGAAAGAGATGATGTTCCAGAATCTTCCAATCACATCCCACCTCCAGAATCTGGTGTTTTAAAGGGCGGTAAAGTTAATTCAAAAACCAGAGCTTTAAAGGCCGTTACAAGTATCATTGCAGACGCCGATGAGAACCCTCAGAAGAAAGTGAACAATGAGACGAATGGAGTCCAAAAGCAAAAGACAGAAGATTTGAGTAAAAGAATAGGTAAATTTGAATACCTTTTTTACAAGTTTTTACTTGTGTTGTTATACATCTGCTTCGGGTTGTTTCGGTACGGTCAATACCAATATAATAAAATGAAACTAAGAATATTCAGTATCATCTACAACCATGCATATACACCACAGTTGATTAGACAGGACGTTATTCCTCTGAAAAAAATTCCTAAAAGGTTGGCCGCTATCTTGGAAGTCAAGCCAGTTGGCGACGTTGGCGGCGGTGTGACAGGTTTATTAAATGACGCGAGTGAAATTGTTTGCTGGACTGTTTCAGCTGGTATAAAACATTTGATGTTGTACGATTACGATGGAATATTACAAAGAAATGTTCCAGAGCTGAGAATGGAAATTCATTCCAACCTGGCTAAATATTTTGGGCCAGCTCATGTTCCAAACTACGCTGTTAAAATACCTCATTCTAACAAGATATTCTACAATCTAGACGGAATTGAAACCGAGACTGATGTAGGCAATGAGATAGAAGCTAACCAAGAAAAGGACAAAATTGCTATTGAAATTTCTTTATTGTCTAACAGAGATGGTAGAGAAACGATTGTCGATCTGACCAAAACTATGGCTGAGTTATGTGCGGTTAACGAATTGAGCGTTTCTGACATCACAATGGATTTAGTTGATTCAGAACTGAAACAACTAGTTGGACCCGAACCAGATTTACTGTTATACTTCGGGCCTTCGTTGGATTTACAAGGGTTCCCACCTTGGCATATTAGATTAACCGAATTTTATTGGGAAAAAGATAACAACGAAGTCATATATTCGGTTTTCATCCGCGGCCTAAGACAGTACGCAGGATGTAAAGTGAATGTTGGTAAATGA","protein_sequence":"MPTMIKKDDKAMEPPNEKPHRKIERDDVPESSNHIPPPESGVLKGGKVNSKTRALKAVTSIIADADENPQKKVNNETNGVQKQKTEDLSKRIGKFEYLFYKFLLVLLYICFGLFRYGQYQYNKMKLRIFSIIYNHAYTPQLIRQDVIPLKKIPKRLAAILEVKPVGDVGGGVTGLLNDASEIVCWTVSAGIKHLMLYDYDGILQRNVPELRMEIHSNLAKYFGPAHVPNYAVKIPHSNKIFYNLDGIETETDVGNEIEANQEKDKIAIEISLLSNRDGRETIVDLTKTMAELCAVNELSVSDITMDLVDSELKQLVGPEPDLLLYFGPSLDLQGFPPWHIRLTEFYWEKDNNEVIYSVFIRGLRQYAGCKVNVGK"},{"created_at":"2011-05-27T03:49:37.000Z","updated_at":"2011-07-22T17:54:30.000Z","name":"Putative dehydrodolichyl diphosphate synthase","uniprot_id":"Q03175","uniprot_name":"SRT1_YEAST","enzyme":true,"transporter":false,"gene_name":"SRT1","num_residues":343,"molecular_weight":"40199.69922","theoretical_pi":"10.03","general_function":"Involved in transferase activity, transferring alkyl or aryl (other than methyl) groups","specific_function":"Could be a cis-prenyl transferase that adds multiple copies of isopentenyl pyrophosphate (ipp) to farnesyl pyrophosphate (FPP) to produce dehydrodolichyl diphosphate (DeDol- PP)","reactions":[{"id":1392,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1393,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1394,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1395,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1396,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1397,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1398,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1399,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1400,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1401,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1402,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1403,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1404,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1405,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1406,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1407,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1408,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1409,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1410,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":14431,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006945","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"AB013498","genbank_protein_id":"4126459","gene_card_id":"SRT1","chromosome_location":"chromosome 13","locus":"YMR101C","synonyms":["DEDOL-PP synthase"],"enzyme_classes":["2.5.1.-"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" transferase activity, transferring alkyl or aryl (other than methyl) groups"},{"category":"Process","description":" Not Available"}],"pfams":[{"name":"Prenyltransf","identifier":"PF01255"}],"pathways":[{"name":"Terpenoid backbone biosynthesis","kegg_map_id":"00900"}],"gene_sequence":"ATGAAAATGCCCAGTATTATTCAGATTCAGTTTGTAGCCCTAAAAAGGCTTTTGGTAGAAACCAAAGAACAGATGTGCTTCGCAGTGAAAAGTATATTTCAGAGAGTATTTGCGTGGGTTATGTCATTAAGCTTGTTTTCATGGTTTTATGTAAATCTTCAGAATATTTTGATAAAAGCATTAAGGGTAGGGCCAGTGCCTGAACATGTCTCCTTTATCATGGATGGTAACCGGAGATATGCCAAGTCAAGAAGGCTACCAGTAAAAAAAGGCCATGAAGCTGGTGGGTTAACGTTACTAACACTACTGTATATCTGCAAAAGATTGGGTGTAAAATGTGTTTCCGCCTATGCATTTTCTATTGAAAATTTTAATAGACCAAAAGAAGAAGTAGATACGCTAATGAATTTGTTTACGGTAAAGCTTGATGAATTCGCAAAAAGAGCCAAGGACTATAAGGATCCCTTATACGGATCTAAAATAAGAATAGTAGGTGATCAATCTTTACTATCTCCAGAAATGAGAAAAAAAATTAAAAAAGTGGAAGAAATCACACAGGATGGAGACGATTTCACTTTATTTATATGTTTTCCTTACACTTCAAGAAATGATATGTTACATACTATTCGTGATTCAGTTGAAGACCATTTGGAAAATAAATCACCAAGGATTAATATAAGAAAATTTACTAATAAAATGTACATGGGTTTCCATTCCAATAAATGTGAATTATTAATCAGAACAAGTGGGCATAGGAGGCTCTCAGACTATATGCTATGGCAAGTACATGAAAATGCCACCATTGAATTTAGTGATACGTTGTGGCCAAATTTTAGCTTCTTTGCTATGTACCTGATGATTCTCAAATGGTCCTTCTTTTCCACCATTCAAAAATATAATGAGAAGAATCACTCATTGTTTGAAAAAATACATGAAAGCGTTCCTTCAATATTTAAAAAAAAGAAAACAGCTATGTCTTTGTACAACTTTCCAAACCCCCCCATTTCAGTTTCGGTTACAGGAGATGAATAA","protein_sequence":"MKMPSIIQIQFVALKRLLVETKEQMCFAVKSIFQRVFAWVMSLSLFSWFYVNLQNILIKALRVGPVPEHVSFIMDGNRRYAKSRRLPVKKGHEAGGLTLLTLLYICKRLGVKCVSAYAFSIENFNRPKEEVDTLMNLFTVKLDEFAKRAKDYKDPLYGSKIRIVGDQSLLSPEMRKKIKKVEEITQDGDDFTLFICFPYTSRNDMLHTIRDSVEDHLENKSPRINIRKFTNKMYMGFHSNKCELLIRTSGHRRLSDYMLWQVHENATIEFSDTLWPNFSFFAMYLMILKWSFFSTIQKYNEKNHSLFEKIHESVPSIFKKKKTAMSLYNFPNPPISVSVTGDE"},{"created_at":"2011-05-27T03:50:01.000Z","updated_at":"2011-07-22T17:54:30.000Z","name":"Dehydrodolichyl diphosphate synthase","uniprot_id":"P35196","uniprot_name":"RER2_YEAST","enzyme":true,"transporter":false,"gene_name":"RER2","num_residues":286,"molecular_weight":"32693.30078","theoretical_pi":"7.91","general_function":"Involved in transferase activity, transferring alkyl or aryl (other than methyl) groups","specific_function":"Cis-prenyl transferase that adds multiple copies of isopentenyl pyrophosphate (IPP) to farnesyl pyrophosphate (FPP) to produce dehydrodolichyl diphosphate (Dedol-PP)","reactions":[{"id":1392,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1393,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1394,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1395,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1396,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1397,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1398,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1399,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1400,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1401,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1402,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1403,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1404,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1405,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1406,"direction":"\u003c\u003e","locations":"lipid particle","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":14431,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006945","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Endoplasmic reticulum membrane; Peripheral membrane protein","genbank_gene_id":"AB013497","genbank_protein_id":"4126457","gene_card_id":"RER2","chromosome_location":"chromosome 2","locus":"YBR002C","synonyms":["DEDOL-PP synthase"],"enzyme_classes":["2.5.1.-"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" transferase activity, transferring alkyl or aryl (other than methyl) groups"},{"category":"Process","description":" Not Available"}],"pfams":[{"name":"Prenyltransf","identifier":"PF01255"}],"pathways":[{"name":"Terpenoid backbone biosynthesis","kegg_map_id":"00900"}],"gene_sequence":"ATGGAAACGGATAGTGGTATACCTGGTCATTCATTTGTGTTAAAGTGGACAAAAAACATCTTTTCGCGCACATTGCGTGCATCTAACTGTGTACCTAGACATGTTGGGTTCATCATGGATGGGAACAGGAGATTCGCTAGAAAGAAAGAGATGGACGTAAAGGAGGGCCACGAGGCAGGATTTGTTAGTATGAGTAGAATCTTAGAACTGTGTTATGAAGCAGGAGTCGATACGGCTACCGTGTTTGCCTTTTCAATTGAAAATTTCAAGAGGAGCTCACGGGAAGTTGAATCACTGATGACTTTAGCGCGCGAAAGGATACGACAAATCACAGAACGTGGAGAGCTGGCCTGTAAGTATGGGGTACGCATTAAAATTATCGGCGATCTCTCTTTGTTGGATAAGTCTCTATTAGAAGATGTTCGGGTTGCTGTGGAAACTACAAAGAACAACAAAAGGGCCACGTTAAATATCTGCTTTCCATATACAGGCAGGGAAGAAATCTTGCATGCCATGAAAGAAACAATTGTTCAACATAAGAAGGGCGCCGCTATAGACGAAAGCACGTTAGAATCGCATCTCTACACGGCGGGGGTACCCCCTTTAGATTTATTGATTAGGACAAGTGGCGTTTCCAGATTAAGTGACTTTTTGATATGGCAGGCATCGAGTAAGGGCGTACGCATCGAATTGCTGGATTGTTTATGGCCAGAGTTTGGACCTATACGGATGGCATGGATTTTATTAAAATTTTCGTTTCACAAATCCTTTTTAAACAAAGAGTACAGATTAGAGGAAGGTGATTATGACGAGGAAACCAATGGGGACCCCATCGATTTGAAAGAAAAAAAGTTGAATTAA","protein_sequence":"METDSGIPGHSFVLKWTKNIFSRTLRASNCVPRHVGFIMDGNRRFARKKEMDVKEGHEAGFVSMSRILELCYEAGVDTATVFAFSIENFKRSSREVESLMTLARERIRQITERGELACKYGVRIKIIGDLSLLDKSLLEDVRVAVETTKNNKRATLNICFPYTGREEILHAMKETIVQHKKGAAIDESTLESHLYTAGVPPLDLLIRTSGVSRLSDFLIWQASSKGVRIELLDCLWPEFGPIRMAWILLKFSFHKSFLNKEYRLEEGDYDEETNGDPIDLKEKKLN"}]}