{"ymdb_id":"YMDB16258","created_at":"2016-09-12T18:29:41.000Z","updated_at":"2016-10-17T22:34:44.000Z","name":"2-aminoprop-2-enoate","cas":null,"state":null,"melting_point":null,"description":null,"experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":null,"synthesis_reference":null,"chebi_id":null,"hmdb_id":null,"kegg_id":null,"pubchem_id":null,"cs_id":null,"foodb_id":null,"wikipedia_link":null,"biocyc_id":null,"iupac":"2-aminoprop-2-enoate","traditional_iupac":"α-aminoacrylate","logp":"-2.882087225726914","pka":null,"alogps_solubility":"2.62e+02 g/l","alogps_logp":"-0.37","alogps_logs":"0.40","acceptor_count":"3","donor_count":"1","rotatable_bond_count":"1","polar_surface_area":"66.15","refractivity":"31.7534","polarizability":"7.316556706462347","formal_charge":"-1","physiological_charge":"0","pka_strongest_basic":"8.64381918712956","pka_strongest_acidic":"2.5832095700972584","bioavailability":"1","number_of_rings":"0","rule_of_five":"1","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":[],"pathways":[{"name":"Cysteine Metabolism","kegg_map_id":null},{"name":"serine metabolism","kegg_map_id":null}],"growth_conditions":[],"references":[],"proteins":[{"created_at":"2011-05-26T16:31:10.000Z","updated_at":"2011-07-22T17:54:32.000Z","name":"Cystathionine gamma-lyase","uniprot_id":"P31373","uniprot_name":"CYS3_YEAST","enzyme":true,"transporter":false,"gene_name":"CYS3","num_residues":394,"molecular_weight":"42541.69922","theoretical_pi":"6.52","general_function":"Involved in pyridoxal phosphate binding","specific_function":"L-cystathionine + H(2)O = L-cysteine + NH(3) + 2-oxobutanoate","reactions":[{"id":1420,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2423,"direction":"\u003e","locations":"Cytoplasm","altext":"L-cystathionine + H(2)O = L-cysteine + NH(3) + 2-oxobutanoate.","export":false,"pw_reaction_id":null,"source":null},{"id":3779,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006300","source":"Smpdb"},{"id":3780,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006305","source":"Smpdb"},{"id":14294,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006775","source":"Smpdb"},{"id":14295,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006796","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":"1N8P","cellular_location":"Cytoplasm","genbank_gene_id":"D14135","genbank_protein_id":"416164","gene_card_id":"CYS3","chromosome_location":"chromosome 1","locus":"YAL012W","synonyms":["Gamma-cystathionase","Sulfur transfer protein 1"],"enzyme_classes":["4.4.1.1"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" cofactor binding"},{"category":"Function","description":" pyridoxal phosphate binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" binding"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" cellular metabolic process"},{"category":"Process","description":" cellular amino acid and derivative metabolic process"},{"category":"Process","description":" cellular amino acid metabolic process"}],"pfams":[{"name":"Cys_Met_Meta_PP","identifier":"PF01053"}],"pathways":[{"name":"Glycine, serine and threonine metabolism","kegg_map_id":"00260"},{"name":"Cysteine and methionine metabolism","kegg_map_id":"00270"},{"name":"Selenocompound metabolism","kegg_map_id":"00450"},{"name":"Nitrogen metabolism","kegg_map_id":"00910"},{"name":"Cysteine Metabolism","kegg_map_id":null},{"name":"Sulfur metabolism","kegg_map_id":"00920"}],"gene_sequence":"ATGACTCTACAAGAATCTGATAAATTTGCTACCAAGGCCATTCATGCCGGTGAACATGTGGACGTTCACGGTTCCGTGATCGAACCCATTTCTTTGTCCACCACTTTCAAACAATCTTCTCCAGCTAACCCTATCGGTACTTACGAATACTCCAGATCTCAAAATCCTAACAGAGAGAACTTGGAAAGAGCAGTTGCCGCTTTAGAGAACGCTCAATACGGGTTGGCTTTCTCCTCTGGTTCTGCCACCACCGCCACAATCTTGCAATCGCTTCCTCAGGGCTCCCATGCGGTCTCTATCGGTGATGTGTACGGTGGTACCCACAGATACTTCACCAAAGTCGCCAACGCTCACGGTGTGGAAACCTCCTTCACTAACGATTTGTTGAACGATCTACCTCAATTGATAAAGGAAAACACCAAATTGGTCTGGATCGAAACCCCAACCAACCCAACTTTGAAGGTCACCGACATCCAAAAGGTGGCAGACCTTATCAAGAAGCACGCTGCCGGCCAAGACGTGATCTTGGTTGTCGACAACACCTTCTTGTCCCCATATATCTCCAATCCATTGAACTTCGGTGCAGACATCGTTGTCCACTCCGCTACAAAGTACATCAACGGTCACTCAGACGTTGTGCTCGGTGTCCTGGCCACTAATAACAAGCCATTGTACGAGCGTCTGCAGTTCTTACAAAACGCCATTGGTGCTATCCCATCTCCTTTCGATGCTTGGTTGACCCACAGAGGTTTGAAGACTTTGCATCTACGTGTCAGACAAGCTGCCCTCAGCGCCAACAAAATCGCTGAATTCTTGGCAGCAGACAAGGAAAACGTTGTCGCAGTCAACTACCCAGGTTTGAAGACACACCCTAACTACGACGTAGTGTTAAAGCAACACCGTGATGCCCTTGGTGGTGGTATGATCTCCTTCAGAATCAAGGGTGGTGCTGAAGCTGCTTCCAAGTTCGCCTCCTCCACAAGACTGTTCACATTGGCCGAATCCCTTGGTGGTATCGAATCTCTATTGGAAGTGCCCGCTGTGATGACCCACGGTGGTATCCCAAAGGAGGCCAGAGAGGCCTCTGGTGTTTTTGACGACTTGGTTAGAATCTCTGTCGGTATTGAAGACACTGACGATCTTTTGGAAGACATCAAGCAAGCCTTGAAACAAGCCACCAACTAA","protein_sequence":"MTLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQATN"},{"created_at":"2011-05-26T17:03:27.000Z","updated_at":"2011-05-27T15:01:01.000Z","name":"Catabolic L-serine/threonine dehydratase","uniprot_id":"P25379","uniprot_name":"STDH_YEAST","enzyme":true,"transporter":false,"gene_name":"CHA1","num_residues":360,"molecular_weight":"39301.0","theoretical_pi":"9.01","general_function":"Involved in catalytic activity","specific_function":"L-serine = pyruvate + NH(3)","reactions":[{"id":1703,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1706,"direction":"\u003e","locations":"mitochondrion;cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2461,"direction":"\u003e","locations":"Cytoplasm;Mitochondrion","altext":"L-serine = pyruvate + NH(3).","export":false,"pw_reaction_id":null,"source":null},{"id":2460,"direction":"\u003e","locations":"Mitochondrion","altext":"L-threonine = 2-oxobutanoate + NH(3).","export":false,"pw_reaction_id":null,"source":null},{"id":3864,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006385","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Mitochondrion","genbank_gene_id":"M85194","genbank_protein_id":"172589","gene_card_id":"CHA1","chromosome_location":"chromosome 3","locus":"YCL064C","synonyms":["L-serine dehydratase","L-serine deaminase","L-threonine dehydratase","L-threonine deaminase"],"enzyme_classes":["4.3.1.17","4.3.1.19"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" cofactor binding"},{"category":"Function","description":" pyridoxal phosphate binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" binding"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" cellular metabolic process"},{"category":"Process","description":" cellular amino acid and derivative metabolic process"},{"category":"Process","description":" cellular amino acid metabolic process"}],"pfams":[{"name":"PALP","identifier":"PF00291"}],"pathways":[{"name":"Glycine, serine and threonine metabolism","kegg_map_id":"00260"},{"name":"Valine, leucine and isoleucine biosynthesis","kegg_map_id":"00290"},{"name":"serine metabolism","kegg_map_id":null}],"gene_sequence":"ATGTCGATAGTCTACAATAAAACACCATTATTACGTCAATTCTTCCCCGGAAAGGCTTCTGCACAATTTTTCTTGAAATATGAATGCCTTCAACCAAGTGCCTCCTTCAAAAGTAGAGGAATCGGTAATCTCATCATGAAAAGTGCCATTCGAATTCAAAAGGACGGTAAAAGATCTCCTCAGGTTTTCGCTAGTTCTGGCGGTAATGCCGGTTTTGCTGCTGCAACAGCATGTCAAAGACTGTCTCTACCATGTACAGTCGTGGTTCCTACAGCGACAAAGAAGAGAATGGTAGATAAAATCAGGAACACCGGTGCCCAGGTTATCGTGAGTGGTGCCTACTGGAAAGAAGCAGATACTTTTTTAAAAACAAATGTCATGAATAAAATAGACTCTCAGGTCATTGAGCCCATTTATGTTCATCCCTTCGATAATCCGGATATTTGGGAAGGACATTCATCTATGATAGATGAAATAGTACAAGATTTGAAATCGCAACATATTTCCGTAAATAAGGTTAAAGGCATAGTATGCAGCGTTGGTGGAGGTGGTTTATACAATGGTATTATTCAAGGTTTGGAAAGGTATGGTTTAGCTGATAGGATCCCTATTGTGGGGGTGGAAACGAATGGATGTCATGTTTTCAATACTTCTTTGAAAATAGGCCAACCAGTTCAATTCAAGAAGATAACAAGTATTGCTACTTCTCTAGGAACGGCCGTGATCTCTAATCAAACTTTCGAATACGCTCGCAAATACAACACCAGATCCGTTGTAATAGAGGACAAAGATGTGATTGAACCCTGTCTTAAATATACACATCAATTCAATATGGTGATTGAACCGGCATGTGGCGCCGCATTGCATTTGGGTTACAACACTAAGATCCTAGAAAATGCACTGGGCTCAAAATTAGCTGCGGATGACATTGTGATAATTATTGCTTGTGCGAGCTCCTCTAATACTATAAAGGACTTGGAAGAAGCGTTGGATAGCATGAGAAAAAAAGACACTCCTGTAATAGAAGTCGCTGACAATTTCATATTTCCAGAAAAAAATATTGTGAATTTAAAAAGTGCTTGA","protein_sequence":"MSIVYNKTPLLRQFFPGKASAQFFLKYECLQPSGSFKSRGIGNLIMKSAIRIQKDGKRSPQVFASSGGNAGFAAATACQRLSLPCTVVVPTATKKRMVDKIRNTGAQVIVSGAYWKEADTFLKTNVMNKIDSQVIEPIYVHPFDNPDIWEGHSSMIDEIVQDLKSQHISVNKVKGIVCSVGGGGLYNGIIQGLERYGLADRIPIVGVETNGCHVFNTSLKIGQPVQFKKITSIATSLGTAVISNQTFEYARKYNTRSVVIEDKDVIETCLKYTHQFNMVIEPACGAALHLGYNTKILENALGSKLAADDIVIIIACGGSSNTIKDLEEALDSMRKKDTPVIEVADNFIFPEKNIVNLKSA"}]}