{"ymdb_id":"YMDB16158","created_at":"2016-09-12T18:18:03.000Z","updated_at":"2016-10-17T22:34:42.000Z","name":"Amylose","cas":null,"state":"Solid","melting_point":null,"description":null,"experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":null,"synthesis_reference":null,"chebi_id":null,"hmdb_id":null,"kegg_id":null,"pubchem_id":null,"cs_id":null,"foodb_id":null,"wikipedia_link":null,"biocyc_id":null,"iupac":"5-{[3,4-dihydroxy-6-(hydroxymethyl)-5-methoxyoxan-2-yl]oxy}-6-(hydroxymethyl)-2-methoxyoxane-3,4-diol","traditional_iupac":"5-{[3,4-dihydroxy-6-(hydroxymethyl)-5-methoxyoxan-2-yl]oxy}-6-(hydroxymethyl)-2-methoxyoxane-3,4-diol","logp":"-3.417121856333334","pka":"12.551514953224267","alogps_solubility":"3.39e+02 g/l","alogps_logp":"-2.41","alogps_logs":"-0.04","acceptor_count":"11","donor_count":"6","rotatable_bond_count":"6","polar_surface_area":"167.52999999999997","refractivity":"77.83910000000002","polarizability":"35.79238830277978","formal_charge":"0","physiological_charge":"0","pka_strongest_basic":"-2.981292469633522","pka_strongest_acidic":"11.97359877019443","bioavailability":"0","number_of_rings":"2","rule_of_five":"0","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":[],"pathways":[{"name":"Starch and sucrose metabolism","kegg_map_id":"00500"}],"growth_conditions":[],"references":[],"proteins":[{"created_at":"2011-05-27T06:37:44.000Z","updated_at":"2011-05-27T15:01:26.000Z","name":"Glycogen [starch] synthase isoform 2","uniprot_id":"P27472","uniprot_name":"GYS2_YEAST","enzyme":true,"transporter":false,"gene_name":"GSY2","num_residues":705,"molecular_weight":"80078.20313","theoretical_pi":"6.31","general_function":"Involved in glycogen (starch) synthase activity","specific_function":"Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan. Is believed to regulate the synthesis of glycogen","reactions":[{"id":2792,"direction":"\u003e","locations":"","altext":"UDP-glucose ((1-\u003e4)-alpha-D-glucosyl)(n) = UDP + ((1-\u003e4)-alpha-D-glucosyl)(n+1).","export":false,"pw_reaction_id":null,"source":null},{"id":14352,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006867","source":"Smpdb"},{"id":14362,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006879","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"M65206","genbank_protein_id":"171619","gene_card_id":"GSY2","chromosome_location":"chromosome 12","locus":"YLR258W","synonyms":[],"enzyme_classes":["2.4.1.11"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" UDP-glycosyltransferase activity"},{"category":"Function","description":" UDP-glucosyltransferase activity"},{"category":"Function","description":" glycogen (starch) synthase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" transferase activity, transferring glycosyl groups"},{"category":"Process","description":" monosaccharide metabolic process"},{"category":"Process","description":" hexose metabolic process"},{"category":"Process","description":" glucose metabolic process"},{"category":"Process","description":" glycogen metabolic process"},{"category":"Process","description":" glycogen biosynthetic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" small molecule metabolic process"},{"category":"Process","description":" alcohol metabolic process"}],"pfams":[{"name":"Glycogen_syn","identifier":"PF05693"}],"pathways":[{"name":"Starch and sucrose metabolism","kegg_map_id":"00500"}],"gene_sequence":"ATGTCCCGTGACCTACAAAACCATTTGTTATTCGAGACTGCGACTGAGGTTGCTAATAGGGTTGGTGGTATTTACTCCGTGCTAAAATCGAAGGCTCCCATTACGGTTGCCCAGTATAAAGACCATTACCACTTGATAGGGCCCTTAAATAAAGCCACTTATCAAAATGAAGTTGATATACTAGATTGGAAGAAGCCTGAGGCCTTTTCCGATGAAATGAGGCCAGTGCAGCATGCCCTGCAAACAATGGAATCTAGAGGAGTTCATTTTGTTTATGGGAGGTGGCTGATTGAAGGTGCTCCAAAAGTAATACTTTTTGACTTGGATTCTGTGAGAGGTTATTCGAATGAATGGAAGGGTGATTTATGGTCATTAGTAGGAATTCCCTCTCCTGAGAATGATTTCGAGACGAATGATGCTATCCTATTGGGGTATACAGTCGCTTGGTTTCTAGGCGAAGTGGCTCATCTCGATTCACAACACGCAATTGTTGCGCACTTTCACGAATGGTTGGCCGGTGTTGCGTTACCATTATGCCGTAAAAGGCGTATCGATGTAGTTACCATTTTCACCACTCATGCTACTTTATTGGGACGGTATTTATGCGCCTCCGGCAGTTTCGATTTTTACAATTGTTTAGAATCTGTTGATGTTGATCACGAAGCTGGCAGATTTGGCATATACCATCGTTATTGTATAGAGAGAGCGGCGGCTCATTCTGCAGACGTATTCACTACGGTGTCACAAATAACTGCTTTTGAAGCGGAACATCTTTTGAAAAGAAAACCAGATGGGATTTTGCCTAATGGACTGAACGTCATCAAATTTCAAGCATTTCATGAGTTCCAAAATTTGCATGCTTTGAAAAAAGAAAAAATCAATGACTTTGTAAGAGGCCATTTTCATGGTTGCTTCGATTTCGATCTAGACAACACCTTGTACTTTTTTATTGCTGGTAGATATGAGTATAAAAATAAGGGTGCTGACATGTTTATTGAGGCTCTAGCGCGTTTGAACTACAGATTAAAAGTATCTGGATCCAAAAAAACTGTGGTAGCGTTTATTGTCATGCCCGCCAAAAATAATTCCTTCACTGTTGAAGCATTGAAGGGCCAGGCTGAGGTGAGGGCGTTAGAAAATACTGTACACGAAGTGACTACTTCAATTGGTAAAAGAATATTCGATCATGCTATCAGGTACCCCCACAATGGGCTGACGACGGAATTACCAACCGATTTGGGTGAATTACTAAAGAGTTCGGATAAAGTTATGTTAAAGAGACGTATTTTGGCTTTGAGAAGGCCGGAGGGACAGTTACCCCCAATAGTTACACACAATATGGTCGATGACGCTAATGACCTGATTTTAAATAAAATCAGACAAGTTCAATTGTTCAATAGCCCAAGTGATCGTGTTAAAATGATCTTCCATCCAGAATTTTTGAACGCTAATAATCCGATCCTTGGTTTAGATTATGATGAGTTCGTTCGTGGTTGCCATTTGGGTGTTTTCCCTTCATACTACGAGCCTTGGGGTTACACACCTGCAGAATGTACAGTAATGGGTGTTCCCTCCATCACGACAAATGTCTCTGGCTTCGGTTCCTATATGGAAGACTTGATCGAAACCAACCAAGCAAAAGATTACGGTATTTATATTGTGGATCGTCGTTTCAAGGCACCTGATGAATCTGTGGAACAATTAGTTGACTACATGGAAGAATTTGTAAAAAAGACAAGAAGGCAAAGAATTAATCAAAGAAATAGAACTGAAAGACTGTCCGACTTACTGGACTGGAAAAGAATGGGTCTCGAATACGTCAAGGCAAGGCAGTTAGCATTAAGAAGAGGCTATCCTGATCAGTTCAGAGAGCTCGTTGGTGAAGAACTAAATGATTCCAACATGGATGCTCTAGCAGGCGGAAAGAAATTGAAAGTTGCAAGACCGCTTAGTGTACCTGGCTCACCAAGAGATTTGAGATCAAACAGCACAGTCTACATGACCCCTGGTGATTTGGGTACTCTGCAGGAGGTTAATAACGCGGACGATTATTTTTCATTGGGAGTGAATCCTGCAGCTGACGATGACGACGATGGCCCATATGCTGATGACAGTTAA","protein_sequence":"MSRDLQNHLLFETATEVANRVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHFVYGRWLIEGAPKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGAYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNRTERLSDLLDWKRMGLEYVKARQLALRRGYPDQFRELVGEELNDSNMDALAGGKKLKVARPLSVPGSPRDLRSNSTVYMTPGDLGTLQEVNNADDYFSLGVNPAADDDDDGPYADDS"},{"created_at":"2011-05-27T09:46:58.000Z","updated_at":"2011-07-22T17:53:39.000Z","name":"1,4-alpha-glucan-branching enzyme","uniprot_id":"P32775","uniprot_name":"GLGB_YEAST","enzyme":true,"transporter":false,"gene_name":"GLC3","num_residues":704,"molecular_weight":"81114.89844","theoretical_pi":"6.1","general_function":"Involved in catalytic activity","specific_function":"Transfers a segment of a (1-\u003e4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain","reactions":[{"id":1129,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":14353,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006868","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasmic","genbank_gene_id":"M76739","genbank_protein_id":"171569","gene_card_id":"GLC3","chromosome_location":"chromosome 5","locus":"YEL011W","synonyms":["Glycogen-branching enzyme"],"enzyme_classes":["2.4.1.18"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" cation binding"},{"category":"Function","description":" hydrolase activity"},{"category":"Function","description":" hydrolase activity, acting on glycosyl bonds"},{"category":"Function","description":" hydrolase activity, hydrolyzing O-glycosyl compounds"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" binding"},{"category":"Function","description":" ion binding"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" primary metabolic process"},{"category":"Process","description":" carbohydrate metabolic process"}],"pfams":[{"name":"Alpha-amylase","identifier":"PF00128"},{"name":"Alpha-amylase_C","identifier":"PF02806"},{"name":"CBM_48","identifier":"PF02922"}],"pathways":[{"name":"Starch and sucrose metabolism","kegg_map_id":"00500"}],"gene_sequence":"ATGTACAACATTCCAGATAATGTCAAAGGGGCTGTAGAATTTGATCCATGGTTGAAACCGTTTGCCGATGTACTTTCTGAAAGAAGATACCTAGCTGACAAGTGGTTGTACGACATAACTCATGCTACGCCTGATGGTTCGTATCAGTCACTCAGTAAGTTTGCTAGAGATTCATACAAGTCATATGGGTTGCATGCCAATCCGGAAACCAAAGAAATCACTTACAAAGAGTGGGCACCCAATGCGGAACGTGCATTTCTAGTGGGAGATTTCAATAACTGGGATACCACATCTCATGAGCTCAAGAACAAGGACGAATTTGGAAATTTTACAATCACACTTCATCCTTTACCTAACGGCGATTTCGCCATCCCTCATGATTCGAAGATTAAAGTCATGTTTATTTTGCCAGATGGTTCCAAGATCTTTCGTTTACCTGCGTGGATCACAAGGGCTACACAGCCTTCTAAGGAAACTTCTAAACAGTTCGGGCCCGCATATGAAGGTAGGTTTTGGAATCCAGAGAACCCCTACAAATTTGTACATCCAAGGCCAAAGTTTAGTGAATCTGTAGATTCCTTAAGGATTTATGAAGCCCACGTCGGTATTTCGAGTCCAGAACCAAAGATAACCACATATAAAGAATTTACTGAGAAGGTCTTACCCAGAATCAAATATCTTGGCTACGATGCAATTCAATTAATGGCTATTATGGAACATGCTTATTATGCATCATTTGGCTACCAAGTGACCAATTTTTTTGCGGCGAGCTCCCGTTTCGGCACCCCTGAGGAATTAAAGGAGCTGATTGATACTGCACATTCTATGGGCATCCTAGTTTTATTGGATGTAGTTCATAGCCATGCTTCTAAAAACGTCGAGGATGGGTTGAACATGTTTGACGGTTCTGATCATCAGTATTTCCATTCTATAAGCTCCGGTAGGGGTGAGCATCCGCTGTGGGATTCCCGTCTTTTTAATTACGGAAAATTTGAAGTGCAGCGATTCTTATTAGCAAACCTGGCATTTTATGTTGACGTTTATCAGTTTGATGGGTTTAGATTCGATGGTGTCACATCAATGTTATACGTTCATCATGGTGTTGGTGCCGGTGGGTCTTTTAGCGGTGACTATAACGAATATCTTTCTCGTGACAGGTCCTTCGTCGATCATGAAGCCTTAGCTTATTTAATGTTAGCCAATGATTTGGTTCACGAAATGTTGCCAAATCTGGCTGTAACTGTTGCAGAAGATGTCTCTGGTTATCCAACTTTATGTTTACCCCGCTCCATAGGTGGTACTGGTTTCGACTACAGATTAGCAATGGCTTTGCCTGATATGTGGATCAAACTAATCAAGGAGAAGAAAGATGATGAATGGGAGATGGGAAGTATTGTATACACTTTAACTAATAGACGATATGGTGAAAAAGTGGTTGCTTATTGTGAGTCGCACGACCAAGCTTTAGTTGGTGATAAGACATTAGCGTTTTGGTTGATGGATGCCGCTATGTACACCGATATGACTGTATTGAAGGAACCATCCATCGTTATTGACCGTGGTATTGCTCTACACAAGATGATTAGGCTGATCACTCACTCGCTGGGAGGCGAGGCTTATTTGAACTTCGAAGGTAATGAGTTCGGTCATCCAGAATGGTTGGATTTCCCTAATGTTAACAATGGCGATACGTACAAGTATGCTCGTAGGCAGTTTAATTTGGCTGATGATCCCTTACTGCGTTACCAGAATTTAAATGAGTTTGATAGATCAATGCAATTATGTGAGAAAAGGCATAAGTGGCTGAACACGAAACAGGCTTATGTTTCATTAAAACATGAAGGTGACAAAATGATTGTGTTTGAAAGAAATAATCTGTTGTTTATTTTCAACTTCCATCCTACAAACAGCTACAGCGATTATAGAGTTGGTGTCGAAAAAGCTGGTACTTATCACATCGTGTTGAACTCAGATCGTGCTGAATTTGGTGGACATAACAGAATCAACGAAAGTTCCGAATTCTTTACCACCGATTTGGAATGGAACAACAGGAAGAACTTCCTCCAAGTTTATATTCCTAGTAGAGTCGCTTTGGTGCTTGCCTTAAAAGAATGA","protein_sequence":"MYNIPDNVKGAVEFDPWLKPFADVLSERRYLADKWLYDITHATPDGSYQSLSKFARDSYKSYGLHANPETKEITYKEWAPNAERAFLVGDFNNWDTTSHELKNKDEFGNFTITLHPLPNGDFAIPHDSKIKVMFILPDGSKIFRLPAWITRATQPSKETSKQFGPAYEGRFWNPENPYKFVHPRPKFSESVDSLRIYEAHVGISSPEPKITTYKEFTEKVLPRIKYLGYDAIQLMAIMEHAYYASFGYQVTNFFAASSRFGTPEELKELIDTAHSMGILVLLDVVHSHASKNVEDGLNMFDGSDHQYFHSISSGRGEHPLWDSRLFNYGKFEVQRFLLANLAFYVDVYQFDGFRFDGVTSMLYVHHGVGAGGSFSGDYNEYLSRDRSFVDHEALAYLMLANDLVHEMLPNLAVTVAEDVSGYPTLCLPRSIGGTGFDYRLAMALPDMWIKLIKEKKDDEWEMGSIVYTLTNRRYGEKVVAYCESHDQALVGDKTLAFWLMDAAMYTDMTVLKEPSIVIDRGIALHKMIRLITHSLGGEAYLNFEGNEFGHPEWLDFPNVNNGDSYKYARRQFNLADDPLLRYQNLNEFDRSMQLCEKRHKWLNTKQAYVSLKHEGDKMIVFERNNLLFIFNFHPTNSYSDYRVGVEKAGTYHIVLNSDRAEFGGHNRINESSEFFTTDLEWNNRKNFLQVYIPSRVALVLALKE"}]}