{"ymdb_id":"YMDB02299","created_at":"2012-06-08T16:16:24.000Z","updated_at":"2016-09-08T18:37:48.000Z","name":"Glyceric acid","cas":"473-81-4","state":"Liquid","melting_point":null,"description":"A colorless syrupy acid, obtained from oxidation of glycerol.","experimental_water_solubility":"1000.0 mg/mL [MERCK INDEX (1996)]","experimental_logp_hydrophobicity":null,"location":null,"synthesis_reference":"Kyriacou, Demetrios; Tougas, Terrence P.  Preparation of glyceric acid by anodic oxidation of glycerol at a silver oxide electrode.    Journal of Organic Chemistry  (1987),  52(11),  2318-19. ","chebi_id":"16659","hmdb_id":"HMDB00139","kegg_id":"C00258","pubchem_id":"439194","cs_id":null,"foodb_id":null,"wikipedia_link":null,"biocyc_id":null,"iupac":"(2R)-2,3-dihydroxypropanoic acid","traditional_iupac":"glycerate","logp":"-1.5187394846666669","pka":"13.495349861440904","alogps_solubility":"6.39e+02 g/l","alogps_logp":"-1.72","alogps_logs":"0.78","acceptor_count":"4","donor_count":"3","rotatable_bond_count":"2","polar_surface_area":"77.76","refractivity":"20.383499999999998","polarizability":"8.95589682155052","formal_charge":"0","physiological_charge":"-1","pka_strongest_basic":"-3.042760876836586","pka_strongest_acidic":"3.4186061267841343","bioavailability":"1","number_of_rings":"0","rule_of_five":"1","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":[" (R)-glycerate"," a,b-Hydroxypropionate"," a,b-Hydroxypropionic acid"," D-Glyceric acid"," Glycerate"," Glyceric acid","D-Glycerate"],"pathways":[{"name":"Glycerol metabolism","kegg_map_id":null}],"growth_conditions":[],"references":[{"pubmed_id":17439666,"citation":"Castrillo, J. I., Zeef, L. A., Hoyle, D. C., Zhang, N., Hayes, A., Gardner, D. C., Cornell, M. J., Petty, J., Hakes, L., Wardleworth, L., Rash, B., Brown, M., Dunn, W. B., Broadhurst, D., O'Donoghue, K., Hester, S. S., Dunkley, T. P., Hart, S. R., Swainston, N., Li, P., Gaskell, S. J., Paton, N. W., Lilley, K. S., Kell, D. B., Oliver, S. G. (2007). \"Growth control of the eukaryote cell: a systems biology study in yeast.\" J Biol 6:4."}],"proteins":[{"created_at":"2011-05-24T20:27:52.000Z","updated_at":"2011-07-22T17:54:08.000Z","name":"Aldehyde dehydrogenase [NAD(P)+] 2","uniprot_id":"P54114","uniprot_name":"ALDH3_YEAST","enzyme":true,"transporter":false,"gene_name":"ALD3","num_residues":506,"molecular_weight":"55384.80078","theoretical_pi":"5.42","general_function":"Involved in oxidoreductase activity","specific_function":"An aldehyde + NAD(P)(+) + H(2)O = an acid + NAD(P)H","reactions":[{"id":1298,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1307,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2315,"direction":"\u003e","locations":"Cytoplasm (Potential)","altext":"An aldehyde + NAD(P)(+) + H(2)O = an acid + NAD(P)H.","export":false,"pw_reaction_id":null,"source":null},{"id":3763,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006287","source":"Smpdb"},{"id":3764,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006418","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"Z49705","genbank_protein_id":"825574","gene_card_id":"ALD3","chromosome_location":"chromosome 13","locus":"YMR169C","synonyms":[],"enzyme_classes":["1.2.1.5"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" oxidoreductase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" oxidation reduction"}],"pfams":[{"name":"Aldedh","identifier":"PF00171"}],"pathways":[{"name":"Glycolysis / Gluconeogenesis","kegg_map_id":"00010"},{"name":"Histidine metabolism","kegg_map_id":"00340"},{"name":"Tyrosine metabolism","kegg_map_id":"00350"},{"name":"Phenylalanine metabolism","kegg_map_id":"00360"},{"name":"beta-Alanine metabolism","kegg_map_id":"00410"},{"name":"Glycerol metabolism","kegg_map_id":null}],"gene_sequence":"ATGCCTACCTTGTATACTGATATCGAAATCCCACAATTGAAAATCTCTTTAAAGCAACCGCTAGGGTTGTTTATCAACAATGAGTTTTGTCCATCATCAGATGGAAAGACCATCGAAACTGTGAACCCAGCTACTGGCGAACCGATAACATCCTTCCAAGCAGCTAACGAAAAGGATGTAGACAAAGCTGTGAAAGCTGCCAGGGCTGCTTTTGATAACGTTTGGTCGAAGACATCTTCTGAGCAACGTGGTATTTATCTTTCAAACTTATTAAAACTTATTGAGGAGGAGCAAGACACACTTGCCGCATTAGAGACTTTAGACGCTGGTAAGCCTTTCCATTCCAATGCTAAACAAGACTTAGCCCAGATTATAGAACTTACAAGATACTATGCGGGGGCGGTCGACAAGTTCAATATGGGTGAAACCATTCCATTGACTTTTAACAAGTTTGCATATACTCTAAAAGTTCCTTTTGGCGTTGTTGCTCAAATCGTTCCATGGAATTATCCTCTAGCTATGGCTTGTAGAAAAATGCAAGGTGCCTTAGCGGCCGGTAACACGGTTATCATCAAACCTGCTGAAAATACCTCTCTATCTCTACTTTATTTTGCTACTTTAATTAAAAAAGCAGGTTTTCCACCTGGTGTTGTCAATGTCATTCCTGGTTATGGTTCCGTTGTGGGGAAAGCTTTAGGAACCCACATGGATATCGACAAAATATCTTTTACGGGAAGTACTAAGGTTGGCGGCTCAGTATTGGAAGCTTCCGGCCAATCGAACCTTAAGGATATCACACTAGAATGCGGTGGTAAGTCTCCTGCTCTTGTATTTGAAGATGCAGACCTTGATAAGGCTATAGAATGGGTAGCAAATGGTATTTTTTTTAATTCGGGACAGATCTGCACTGCAAACTCAAGAGTTTATGTTCAAAGTTCGATCTACGACAAGTTTGTTGAAAAGTTTAAAGAAACTGCAAAGAAGGAGTGGGATGTTGCAGGAAAATTTGATCCGTTTGATGAGAAATGCATCGTTGGTCCAGTTATATCAAGTACACAGTATGACCGCATCAAAAGTTACATAGAACGTGGTAAAAAGGAGGAAAAGTTGGACATGTTCCAGACCTCTGAATTTCCTATTGGTGGAGCTAAAGGCTACTTCATTCCCCCAACCATCTTCACTGATGTACCAGAAACATCTAAGTTGCTGCGTGATGAAATATTTGGCCCGGTTGTGGTTGTTAGCAAGTTCACAAATTATGATGACGCTCTGAAGCTGGCTAATGATACTTGCTACGGGCTCGCCTCTGCGGTCTTCACCAAAGATGTCAAGAAAGCGCACATGTTTGCTCGCGATATTAAAGCAGGAACTGTTTGGATCAATCAAACCAATCAAGAAGAAGCTAAAGTTCCTTTTGGCGGATTTAAGATGAGTGGTATTGGTAGAGAATCAGGCGACACCGGCGTTGATAACTATTTACAAATAAAATCAGTCCATGTGGATCTTTCATTGGATAAATAA","protein_sequence":"MPTLYTDIEIPQLKISLKQPLGLFINNEFCPSSDGKTIETVNPATGEPITSFQAANEKDVDKAVKAARAAFDNVWSKTSSEQRGIYLSNLLKLIEEEQDTLAALETLDAGKPFHSNAKQDLAQIIELTRYYAGAVDKFNMGETIPLTFNKFAYTLKVPFGVVAQIVPWNYPLAMACRKMQGALAAGNTVIIKPAENTSLSLLYFATLIKKAGFPPGVVNVIPGYGSVVGKALGTHMDIDKISFTGSTKVGGSVLEASGQSNLKDITLECGGKSPALVFEDADLDKAIEWVANGIFFNSGQICTANSRVYVQSSIYDKFVEKFKETAKKEWDVAGKFDPFDEKCIVGPVISSTQYDRIKSYIERGKKEEKLDMFQTSEFPIGGAKGYFIPPTIFTDVPETSKLLRDEIFGPVVVVSKFTNYDDALKLANDTCYGLASAVFTKDVKKAHMFARDIKAGTVWINQTNQEEAKVPFGGFKMSGIGRESGDTGVDNYLQIKSVHVDLSLDK"},{"created_at":"2016-09-09T22:47:03.000Z","updated_at":"2016-09-09T22:47:03.000Z","name":"Probable ATP-dependent kinase TDA10","uniprot_id":"P42938","uniprot_name":"TDA10","enzyme":false,"transporter":false,"gene_name":"TDA10","num_residues":290,"molecular_weight":"33336.605","theoretical_pi":null,"general_function":"kinase activity","specific_function":"ATP-dependent kinase whose specificity is not yet known.","reactions":[{"id":3908,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006419","source":"Smpdb"}],"signal_regions":null,"transmembrane_regions":null,"pdb_id":"1ODF","cellular_location":null,"genbank_gene_id":null,"genbank_protein_id":null,"gene_card_id":null,"chromosome_location":null,"locus":null,"synonyms":["Topoisomerase I damage affected protein 10"],"enzyme_classes":[],"go_classes":[{"category":"Function","description":"cytosol"},{"category":"Function","description":"nucleus"},{"category":"Function","description":"kinase activity"},{"category":"Function","description":"ATP binding"}],"pfams":[],"pathways":[{"name":"Glycerol metabolism","kegg_map_id":null}],"gene_sequence":"ATGTGTGATAAGTCAAAAACGGTATTGGACTACACGATAGAATTCTTGGATAAATATATACCTGAATGGTTTGAGACGGGAAATAAATGCCCCTTGTTCATTTTCTTCTCGGGCCCACAAGGCTCAGGCAAAAGTTTTACAAGTATCCAAATCTATAACCATTTGATGGAAAAATATGGGGGTGAAAAATCTATCGGTTACGCCTCAATTGATGATTTTTATTTAACTCACGAGGACCAATTGAAACTCAATGAGCAATTCAAGAACAATAAGCTGTTACAAGGACGTGGTTTACCAGGTACTCATGATATGAAATTGTTGCAAGAGGTATTGAACACCATCTTCAATAATAATGAACATCCGGATCAAGATACTGTCGTACTACCCAAGTACGATAAATCCCAATTTAAAGGAGAAGGGGACCGTTGCCCCACTGGTCAAAAAATCAAGCTACCAGTCGATATTTTTATCTTAGAAGGTTGGTTCCTCGGGTTCAACCCCATTTTGCAAGGAATTGAGAATAATGATCTTCTTACTGGGGACATGGTTGATGTCAATGCCAAGCTCTTCTTCTATAGCGACTTGTTGTGGCGCAACCCAGAAATCAAATCTTTAGGGATAGTATTCACCACCGATAACATTAACAATGTTTATGGCTGGAGACTACAACAGGAGCATGAACTAATATCAAAGGTCGGAAAGGGGATGACCGACGAACAAGTGCATGCTTTTGTGGATAGATACATGCCCTCCTATAAACTTTATTTGAACGACTTTGTCCGGAGTGAAAGTTTAGGTTCCATTGCTACATTGACGTTAGGAATCGACTCCAACAGGAATGTATATTCTACGAAAACGAGATGTATTGAATAG","protein_sequence":"MCDKSKTVLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESLGSIATLTLGIDSNRNVYSTKTRCIE"}]}