{"ymdb_id":"YMDB00980","created_at":"2011-06-14T17:58:48.000Z","updated_at":"2016-09-08T18:36:07.000Z","name":"(5-Deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium","cas":"22365-13-5","state":"Solid","melting_point":null,"description":"(5-Deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium (S-adenosyl-L-methioninamine) is a biological sulfonium compound known as the major biological methyl donor. It is also a donor of methylene groups, amino groups, ribosyl groups and aminopropyl groups.","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":null,"synthesis_reference":null,"chebi_id":"15625","hmdb_id":"HMDB00988","kegg_id":"C01137","pubchem_id":"439415","cs_id":"25050861","foodb_id":null,"wikipedia_link":null,"biocyc_id":"S-ADENOSYLMETHIONINAMINE","iupac":"{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(3-aminopropyl)methylsulfanium","traditional_iupac":"decarboxylated sam","logp":"-2.750104969875945","pka":"13.949691543979075","alogps_solubility":"1.27e+00 g/l","alogps_logp":"0.28","alogps_logs":"-2.49","acceptor_count":"8","donor_count":"4","rotatable_bond_count":"6","polar_surface_area":"145.33","refractivity":"90.40499999999997","polarizability":"36.96634847619492","formal_charge":"1","physiological_charge":"2","pka_strongest_basic":"10.091308480422201","pka_strongest_acidic":"12.445729428479243","bioavailability":"1","number_of_rings":"3","rule_of_five":"1","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"1","synonyms":["(5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt","(5-Deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium cation","(5-deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium salt","[1-(adenin-9-yl)-1,5-dideoxy-beta-D-ribofuranos-5-yl](3-aminopropyl)(methyl)sulfonium","3-amino-propyl-S-adenosine","dAdoMet","dcSAM","decarboxylated AdoMet","decarboxylated S-adenosylmethionine","decarboxylated SAM","S-Adenosyl-(5')-3-methylthiopropylamine","S-Adenosyl-3-methylthiopropylamine","s-adenosyl-l-methioninamine","S-adenosylmethioninamine","S-methyl-S-adenosyl homocysteamine"],"pathways":[{"name":"Arginine and proline metabolism","kegg_map_id":"00330"},{"name":"Cysteine and methionine metabolism","kegg_map_id":"00270"},{"name":"beta-Alanine metabolism","kegg_map_id":"00410"}],"growth_conditions":[],"references":[{"pubmed_id":21051339,"citation":"UniProt Consortium (2011). \"Ongoing and future developments at the Universal Protein Resource.\" Nucleic Acids Res 39:D214-D219."},{"pubmed_id":6364703,"citation":"Tabor, C. W., Tabor, H. (1984). \"Methionine adenosyltransferase (S-adenosylmethionine synthetase) and S-adenosylmethionine decarboxylase.\" Adv Enzymol Relat Areas Mol Biol 56:251-282."},{"pubmed_id":3087344,"citation":"Pegg, A. E. (1986). \"Recent advances in the biochemistry of polyamines in eukaryotes.\" Biochem J 234:249-262."}],"proteins":[{"created_at":"2011-05-27T02:19:33.000Z","updated_at":"2011-07-22T17:54:00.000Z","name":"S-adenosylmethionine decarboxylase proenzyme","uniprot_id":"P21182","uniprot_name":"DCAM_YEAST","enzyme":true,"transporter":false,"gene_name":"SPE2","num_residues":396,"molecular_weight":"46232.0","theoretical_pi":"5.32","general_function":"Involved in adenosylmethionine decarboxylase activity","specific_function":"S-adenosylmethionine decarboxylase is essential for normal growth, sporulation, maintenance of ds-RNA virus, biosynthesis of spermine and spermidine","reactions":[{"id":1273,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2671,"direction":"\u003e","locations":null,"altext":"S-adenosyl-L-methionine = (5-deoxy-5-adenosyl)(3-aminopropyl)-methylsulfonium salt + CO(2).","export":false,"pw_reaction_id":null,"source":null},{"id":3760,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006284","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"M38434","genbank_protein_id":"171055","gene_card_id":"SPE2","chromosome_location":"chromosome 15","locus":"YOL052C","synonyms":["AdoMetDC","SAMDC","S-adenosylmethionine decarboxylase alpha chain","S-adenosylmethionine decarboxylase beta chain"],"enzyme_classes":["4.1.1.50"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" lyase activity"},{"category":"Function","description":" carbon-carbon lyase activity"},{"category":"Function","description":" carboxy-lyase activity"},{"category":"Function","description":" adenosylmethionine decarboxylase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" cellular amino acid derivative metabolic process"},{"category":"Process","description":" cellular biogenic amine metabolic process"},{"category":"Process","description":" cellular metabolic process"},{"category":"Process","description":" cellular amino acid and derivative metabolic process"},{"category":"Process","description":" spermidine biosynthetic process"},{"category":"Process","description":" polyamine metabolic process"},{"category":"Process","description":" polyamine biosynthetic process"},{"category":"Process","description":" spermine biosynthetic process"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"SAM_decarbox","identifier":"PF01536"}],"pathways":[{"name":"Cysteine and methionine metabolism","kegg_map_id":"00270"},{"name":"Arginine and proline metabolism","kegg_map_id":"00330"},{"name":"beta-Alanine metabolism","kegg_map_id":"00410"}],"gene_sequence":"ATGACTGTCACCATAAAAGAATTGACTAACCACAACTACATTGACCACGAACTATCAGCCACTTTAGACTCAACGGATGCGTTCGAGGGTCCCGAGAAGTTGCTGGAAATCTGGTTCTTCCCTCACAAGAAGTCCATCACGACCGAAAAGACATTAAGAAATATTGGCATGGATAGATGGATCGAGATTTTGAAATTAGTGAAATGCGAAGTTCTTTCCATGAAGAAGACTAAAGAACTGGATGCCTTTTTGTTGAGTGAGTCTTCCCTCTTCGTCTTCGATCACAAATTGACGATGAAGACGTGCGGTACTACAACCACATTGTTCTGTCTCGAAAAGCTTTTCCAGATCGTTGAGCAAGAGTTATCGTGGGCTTTCCGCACAACACAAGGGGGCAAGTACAAACCATTTAAAGTGTTTTATTCTAGACGATGTTTCCTTTTCCCCTGTAAGCAAGCCGCTATCCATCAAAACTGGGCTGACGAAGTCGACTATTTGAACAAATTTTTCGACAATGGTAAAAGTTATTCCGTGGGAAGAAATGACAAGAGCAACCACTGGAACCTGTACGTCACCGAGACGGACCGCTCCACACCTAAGGGAAAGGAGTACATCGAGGATGACGACGAAACTTTCGAAGTACTGATGACGGAGCTGGACCCAGAATGCGCTAGTAAGTTTGTTTGCGGGCCTGAGGCATCCACAACCGCTCTCGTGGAGCCAAACGAAGATAAGGGCCACAACCTCGGCTACCAAATGACTAAAAATACAAGGCTTGACGAAATATATGTCAACTCGGCCCAAGACTCCGATTTATCATTTCACCACGATGCATTTGCGTTCACGCCATGTGGATACTCATCCAATATGATTCTCGCTGAAAAATACTATTACACCCTGCACGTGACTCCGGAAAAGGGTTGGTCTTACGCCTCTTTCGAAAGTAACATACCCGTATTTGACATTTCCCAAGGGAAGCAAGACAACTTGGACGTTCTTCTACATATTCTGAACGTTTTTCAACCAAGAGAGTTCTCGATGACCTTTTTTACCAAAAATTATCAGAACCAATCCTTCCAAAAACTACTAAGCATCAACGAGTCACTGCCCGACTACATCAAGTTAGACAAAATTGTTTATGATCTGGACGACTACCACCTTTTCTATATGAAATTGCAGAAGAAAATATGA","protein_sequence":"MTVTIKELTNHNYIDHELSATLDSTDAFEGPEKLLEIWFFPHKKSITTEKTLRNIGMDRWIEILKLVKCEVLSMKKTKELDAFLLSESSLFVFDHKLTMKTCGTTTTLFCLEKLFQIVEQELSWAFRTTQGGKYKPFKVFYSRRCFLFPCKQAAIHQNWADEVDYLNKFFDNGKSYSVGRNDKSNHWNLYVTETDRSTPKGKEYIEDDDETFEVLMTELDPECASKFVCGPEASTTALVEPNEDKGHNLGYQMTKNTRLDEIYVNSAQDSDLSFHHDAFAFTPCGYSSNMILAEKYYYTLHVTPEKGWSYASFESNIPVFDISQGKQDNLDVLLHILNVFQPREFSMTFFTKNYQNQSFQKLLSINESLPDYIKLDKIVYDLDDYHLFYMKLQKKI"}]}