{"ymdb_id":"YMDB00948","created_at":"2011-05-30T05:15:12.000Z","updated_at":"2016-09-08T18:36:05.000Z","name":"D-ribulose 5-phosphate","cas":"4151-19-3","state":"Solid","melting_point":null,"description":"D-Ribulose 5-phosphate is a metabolite in the pentose phosphate pathway, pentose and glucuronate interconversions, and in the riboflavin metabolism. [KEGG]","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":"cytoplasm","synthesis_reference":"Wong, Chi-Huey; McCurry, Stephen D.; Whitesides, George M.  Practical enzymic syntheses of ribulose 1,5 bisphosphate and ribose 5-phosphate.    Journal of the American Chemical Society  (1980),  102(27),  7938-9. ","chebi_id":"17363","hmdb_id":"HMDB00618","kegg_id":"C00199","pubchem_id":"439167","cs_id":"23106877","foodb_id":null,"wikipedia_link":"Ribulose 5-phosphate","biocyc_id":"RIBULOSE-5P","iupac":"{[(2R,3R)-2,3,5-trihydroxy-4-oxopentyl]oxy}phosphonic acid","traditional_iupac":"Ara","logp":"-2.7602629813333333","pka":"6.504370847667953","alogps_solubility":"2.61e+01 g/l","alogps_logp":"-1.81","alogps_logs":"-0.95","acceptor_count":"7","donor_count":"5","rotatable_bond_count":"6","polar_surface_area":"144.52","refractivity":"42.4722","polarizability":"17.95332136463272","formal_charge":"0","physiological_charge":"-2","pka_strongest_basic":"-3.3276267100529333","pka_strongest_acidic":"1.4785529591465396","bioavailability":"1","number_of_rings":"0","rule_of_five":"1","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":["alpha-D-Ribose 5-phosphate","D-Ribulose 5-phosphate","D-Ribulose 5-phosphic acid","erythro-Pentulose 5-phosphate","Ribulose 5-phosphate","Ribulose phosphate"],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Riboflavin metabolism","kegg_map_id":"00740"},{"name":"Vitamin B6 metabolism","kegg_map_id":"00750"},{"name":"Pentose and glucuronate interconversions","kegg_map_id":"00040"},{"name":"Methane metabolism","kegg_map_id":"00680"},{"name":"Riboneogenesis","kegg_map_id":null},{"name":"xylitol degradation","kegg_map_id":null}],"growth_conditions":[],"references":[{"pubmed_id":21051339,"citation":"UniProt Consortium (2011). \"Ongoing and future developments at the Universal Protein Resource.\" Nucleic Acids Res 39:D214-D219."},{"pubmed_id":21062828,"citation":"Scheer, M., Grote, A., Chang, A., Schomburg, I., Munaretto, C., Rother, M., Sohngen, C., Stelzer, M., Thiele, J., Schomburg, D. (2011). \"BRENDA, the enzyme information system in 2011.\" Nucleic Acids Res 39:D670-D676."},{"pubmed_id":18846089,"citation":"Herrgard, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Bluthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novere, N., Li, P., Liebermeister, W., Mo, M. L., Oliveira, A. P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasic, I., Weichart, D., Brent, R., Broomhead, D. S., Westerhoff, H. V., Kirdar, B., Penttila, M., Klipp, E., Palsson, B. O., Sauer, U., Oliver, S. G., Mendes, P., Nielsen, J., Kell, D. B. (2008). \"A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.\" Nat Biotechnol 26:1155-1160."},{"pubmed_id":14690456,"citation":"Kondo, H., Nakamura, Y., Dong, Y. X., Nikawa, J., Sueda, S. (2004). \"Pyridoxine biosynthesis in yeast: participation of ribose 5-phosphate ketol-isomerase.\" Biochem J 379:65-70."},{"pubmed_id":10935926,"citation":"Vaseghi, S., Baumeister, A., Rizzi, M., Reuss, M. (1999). \"In vivo dynamics of the pentose phosphate pathway in Saccharomyces cerevisiae.\" Metab Eng 1:128-140."},{"pubmed_id":16348083,"citation":"Senac, T., Hahn-Hagerdal, B. (1990). \"Intermediary Metabolite Concentrations in Xylulose- and Glucose-Fermenting Saccharomyces cerevisiae Cells.\" Appl Environ Microbiol 56:120-126."},{"pubmed_id":12595523,"citation":"Jin, C., Barrientos, A., Tzagoloff, A. (2003). \"Yeast dihydroxybutanone phosphate synthase, an enzyme of the riboflavin biosynthetic pathway, has a second unrelated function in expression of mitochondrial respiration.\" J Biol Chem 278:14698-14703."},{"pubmed_id":9032985,"citation":"Bar, J., Naumann, M., Reuter, R., Kopperschlager, G. (1996). \"Improved purification of ribulose 5-phosphate 3-epimerase from Saccharomyces cerevisiae and characterization of the enzyme.\" Bioseparation 6:233-241."},{"pubmed_id":9763699,"citation":"Reuter, R., Naumann, M., Bar, J., Miosga, T., Kopperschlager, G. (1998). \"Ribose-5-phosphate isomerase from Saccharomyces cerevisiae: purification and molecular analysis of the enzyme.\" Bioseparation 7:107-115."}],"proteins":[{"created_at":"2011-05-27T02:11:28.000Z","updated_at":"2011-05-27T15:01:17.000Z","name":"Ribose-5-phosphate isomerase","uniprot_id":"Q12189","uniprot_name":"RPIA_YEAST","enzyme":true,"transporter":false,"gene_name":"RKI1","num_residues":258,"molecular_weight":"28257.80078","theoretical_pi":"5.72","general_function":"Involved in ribose-5-phosphate isomerase activity","specific_function":"D-ribose 5-phosphate = D-ribulose 5-phosphate","reactions":[{"id":1953,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2661,"direction":"\u003e","locations":null,"altext":"D-ribose 5-phosphate = D-ribulose 5-phosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":14083,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006508","source":"Smpdb"},{"id":14084,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R007093","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"X94335","genbank_protein_id":"1164942","gene_card_id":"RKI1","chromosome_location":"chromosome 15","locus":"YOR095C","synonyms":["D-ribose-5-phosphate ketol-isomerase","Phosphoriboisomerase"],"enzyme_classes":["5.3.1.6"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" isomerase activity"},{"category":"Function","description":" intramolecular oxidoreductase activity"},{"category":"Function","description":" intramolecular oxidoreductase activity, interconverting aldoses and ketoses"},{"category":"Function","description":" ribose-5-phosphate isomerase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" small molecule metabolic process"},{"category":"Process","description":" alcohol metabolic process"},{"category":"Process","description":" monosaccharide metabolic process"},{"category":"Process","description":" pentose metabolic process"},{"category":"Process","description":" pentose-phosphate shunt, non-oxidative branch"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"Rib_5-P_isom_A","identifier":"PF06026"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Riboneogenesis","kegg_map_id":null},{"name":"xylitol 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4-phosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":14111,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006542","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"AY557810","genbank_protein_id":"45269511","gene_card_id":"RIB3","chromosome_location":"chromosome 4","locus":"YDR487C","synonyms":["DHBP synthase"],"enzyme_classes":["4.1.99.12"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" lyase activity"},{"category":"Function","description":" carbon-carbon lyase activity"},{"category":"Function","description":" 3,4-dihydroxy-2-butanone-4-phosphate synthase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" nitrogen compound metabolic process"},{"category":"Process","description":" riboflavin metabolic process"},{"category":"Process","description":" riboflavin biosynthetic process"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"DHBP_synthase","identifier":"PF00926"}],"pathways":[{"name":"Riboflavin metabolism","kegg_map_id":"00740"}],"gene_sequence":"ATGTTTACACCAATTGATCAAGCTATAGAACACTTCAAGCAGAATAAGTTTGTAATTGTTATGGACGATGCCGGTCGTGAAAATGAAGGTGATCTTATTTGCGCTGCTGAAAATGTCAGCACTGAACAAATGGCCTTTCTTGTACGCCATTCCTCAGGCTACGTCTGTGCACCTATGACGAATGCCATTGCTGATAAGTTGGACCTTCCACTACTGAGAACAGGCATGAAGTTTGAATCCAATGATGACGACAGGCATGGAACTGCATACACAATAACTGTAGATGTAGCCCAAGGCACTACCACAGGTATTTCTGCTCACGACAGGTCGATGACTTGTAGGGCTCTTGCAGACTCTTCCTCTACGCCAAAATCATTTTTAAAACCAGGGCACATCTGTCCCTTGAGAGCCGCTGATGGCGGTGTTTTGCAGAGAAGAGGCCACACTGAGGCCGGTGTCGATTTGTGTAAACTAAGTGGACTAAGTCCCGTCGCTGTTATTGGCGAATTGGTTAACGATGACGAACAAGGAACTATGATGAGATTAAATGACTGCCAAGCGTTTGGTAAGAAACATGGCATTCCTTTGATCTCCATCGAAGAATTGGCCCAATATTTGAAGAAATAA","protein_sequence":"MFTPIDQAIEHFKQNKFVIVMDDAGRENEGDLICAAENVSTEQMAFLVRHSSGYVCAPMTNAIADKLDLPLLRTGMKFESNDDDRHGTAYTITVDVAQGTTTGISAHDRSMTCRALADSSSTPKSFLKPGHICPLRAADGGVLQRRGHTEAGVDLCKLSGLSPVAVIGELVNDDEQGTMMRLNDCQAFGKKHGIPLISIEELAQYLKK"},{"created_at":"2011-05-27T04:05:49.000Z","updated_at":"2011-05-27T15:01:22.000Z","name":"6-phosphogluconate dehydrogenase, decarboxylating 1","uniprot_id":"P38720","uniprot_name":"6PGD1_YEAST","enzyme":true,"transporter":false,"gene_name":"GND1","num_residues":489,"molecular_weight":"53542.69922","theoretical_pi":"6.6","general_function":"Involved in oxidoreductase activity","specific_function":"Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH","reactions":[{"id":1864,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2758,"direction":"\u003e","locations":"Cytoplasm","altext":"6-phospho-D-gluconate + NADP(+) = D-ribulose 5-phosphate + CO(2) + NADPH.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm","genbank_gene_id":"U00028","genbank_protein_id":"458910","gene_card_id":"GND1","chromosome_location":"chromosome 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reduction"},{"category":"Process","description":" small molecule metabolic process"},{"category":"Process","description":" alcohol metabolic process"},{"category":"Process","description":" monosaccharide metabolic process"},{"category":"Process","description":" hexose metabolic process"},{"category":"Process","description":" glucose metabolic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" glucose catabolic process"}],"pfams":[{"name":"6PGD","identifier":"PF00393"},{"name":"NAD_binding_2","identifier":"PF03446"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Glutathione metabolism","kegg_map_id":"00480"}],"gene_sequence":"ATGTCTGCTGATTTCGGTTTGATTGGTTTGGCCGTCATGGGTCAAAATTTGATCTTGAACGCTGCTGACCACGGTTTCACTGTTTGTGCTTACAACAGAACTCAATCCAAGGTCGACCATTTCTTGGCCAATGAAGCTAAGGGCAAATCTATCATCGGTGCTACTTCCATTGAAGATTTCATCTCCAAATTGAAGAGACCTAGAAAGGTCATGCTTTTGGTTAAAGCTGGTGCTCCAGTTGACGCTTTGATCAACCAAATCGTCCCACTTTTGGAAAAGGGTGATATTATCATCGATGGTGGTAACTCTCACTTCCCAGATTCTAATAGACGTTACGAAGAATTGAAGAAGAAGGGTATTCTTTTCGTTGGTTCTGGTGTCTCCGGTGGTGAGGAAGGTGCCCGTTACGGTCCATCTTTGATGCCAGGTGGTTCTGAAGAAGCTTGGCCACATATTAAGAACATCTTCCAATCCATCTCTGCTAAATCCGACGGTGAACCATGTTGCGAATGGGTTGGCCCAGCCGGTGCTGGTCACTACGTCAAGATGGTTCACAACGGTATTGAATACGGTGATATGCAATTGATTTGTGAAGCTTATGACATCATGAAGAGATTGGGTGGGTTTACCGATAAGGAAATCAGTGACGTTTTTGCCAAATGGAACAATGGTGTCTTGGATTCCTTCTTGGTCGAAATTACCAGAGATATTTTGAAATTCGACGACGTCGACGGTAAGCCATTAGTTGAAAAAATCATGGATACTGCTGGTCAAAAGGGTACTGGTAAGTGGACTGCCATCAACGCCTTGGATTTGGGTATGCCAGTTACTTTGATTGGTGAAGCTGTCTTTGCCCGTTGTCTATCTGCTTTGAAGAACGAGAGAATTAGAGCCTCCAAGGTCTTACCAGGCCCAGAAGTTCCAAAAGACGCCGTCAAGGACAGAGAACAATTTGTCGATGATTTGGAACAAGCTTTGTATGCTTCCAAGATTATTTCTTACGCTCAAGGTTTCATGTTGATCCGTGAAGCTGCTGCTACTTATGGCTGGAAACTAAACAACCCTGCCATCGCTTTGATGTGGAGAGGTGGTTGTATCATTAGATCTGTTTTCTTGGGTCAAATCACAAAGGCCTACAGAGAAGAACCAGATTTGGAAAACTTGTTGTTCAACAAGTTCTTCGCTGATGCCGTCACCAAGGCTCAATCTGGTTGGAGAAAGTCAATTGCGTTGGCTACCACCTACGGTATCCCAACACCAGCCTTTTCCACCGCTTTGTCTTTCTACGATGGGTACAGATCTGAAAGATTGCCAGCCAACTTACTACAAGCTCAACGTGACTACTTTGGTGCTCACACTTTCAGAGTGTTGCCAGAATGTGCTTCTGACAACTTGCCAGTAGACAAGGATATCCATATCAACTGGACTGGCCACGGTGGTAATGTTTCTTCCTCTACATACCAAGCTTAA","protein_sequence":"MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIHINWTGHGGNVSSSTYQA"},{"created_at":"2011-05-27T04:06:40.000Z","updated_at":"2011-05-27T15:01:22.000Z","name":"6-phosphogluconate dehydrogenase, decarboxylating 2","uniprot_id":"P53319","uniprot_name":"6PGD2_YEAST","enzyme":true,"transporter":false,"gene_name":"GND2","num_residues":492,"molecular_weight":"53922.30078","theoretical_pi":"7.32","general_function":"Involved in oxidoreductase activity","specific_function":"Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH","reactions":[{"id":1864,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2758,"direction":"\u003e","locations":"Cytoplasm","altext":"6-phospho-D-gluconate + NADP(+) = D-ribulose 5-phosphate + CO(2) + NADPH.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"AY692811","genbank_protein_id":"51013073","gene_card_id":"GND2","chromosome_location":"chromosome 7","locus":"YGR256W","synonyms":[],"enzyme_classes":["1.1.1.44"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" binding"},{"category":"Function","description":" phosphogluconate dehydrogenase (decarboxylating) activity"},{"category":"Function","description":" nucleotide binding"},{"category":"Function","description":" oxidoreductase activity"},{"category":"Function","description":" cofactor binding"},{"category":"Function","description":" oxidoreductase activity, acting on CH-OH group of donors"},{"category":"Function","description":" oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"},{"category":"Function","description":" NADP or NADPH binding"},{"category":"Function","description":" coenzyme binding"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" pentose-phosphate shunt"},{"category":"Process","description":" oxidation reduction"},{"category":"Process","description":" small molecule metabolic process"},{"category":"Process","description":" alcohol metabolic process"},{"category":"Process","description":" monosaccharide metabolic process"},{"category":"Process","description":" hexose metabolic process"},{"category":"Process","description":" glucose metabolic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" glucose catabolic process"}],"pfams":[{"name":"6PGD","identifier":"PF00393"},{"name":"NAD_binding_2","identifier":"PF03446"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Glutathione metabolism","kegg_map_id":"00480"}],"gene_sequence":"ATGTCAAAGGCAGTAGGTGATTTAGGCTTAGTTGGTTTAGCCGTGATGGGTCAAAATTTGATCTTAAACGCAGCGGATCACGGATTTACCGTGGTTGCTTATAATAGGACGCAATCAAAGGTAGATAGGTTTCTAGCTAATGAGGCAAAAGGAAAATCAATAATTGGTGCAACTTCAATTGAGGACTTGGTTGCGAAACTAAAGAAACCTAGAAAGATTATGCTTTTAATCAAAGCCGGTGCTCCGGTCGACACTTTAATAAAGGAACTTGTACCACATCTTGATAAAGGCGACATTATTATCGACGGTGGTAACTCACATTTCCCGGACACTAACAGACGCTACGAAGAGCTAACAAAGCAAGGAATTCTTTTTGTGGGCTCTGGTGTCTCAGGCGGTGAAGATGGTGCACGTTTTGGTCCATCTTTAATGCCTGGTGGGTCAGCAGAAGCATGGCCGCACATCAAGAACATCTTTCAATCTATTGCCGCCAAATCAAACGGTGAGCCATGCTGCGAATGGGTGGGGCCTGCCGGTTCTGGTCACTATGTGAAGATGGTACACAACGGTATCGAGTACGGTGATATGCAGTTGATTTGCGAGGCTTACGATATCATGAAACGAATTGGCCGGTTTACGGATAAAGAGATCAGTGAAGTATTTGACAAGTGGAACACTGGAGTTTTGGATTCTTTCTTGATTGAAATCACGAGGGACATTTTAAAATTCGATGACGTCGACGGTAAGCCATTGGTGGAAAAAATTATGGATACTGCCGGTCAAAAGGGTACTGGTAAATGGACTGCAATCAACGCCTTGGATTTAGGAATGCCAGTCACTTTAATTGGGGAGGCTGTTTTCGCTCGTTGTTTGTCAGCCATAAAGGACGAACGTAAAAGAGCTTCGAAACTTCTGGCAGGACCAACAGTACCAAAGGATGCAATACATGATAGAGAACAATTTGTGTATGATTTGGAACAAGCATTATACGCTTCAAAGATTATTTCATATGCTCAAGGTTTCATGCTGATCCGCGAAGCTGCCAGATCATACGGCTGGAAATTAAACAACCCAGCTATTGCTCTAATGTGGAGAGGTGGCTGTATAATCAGATCTGTGTTCTTAGCTGAGATTACGAAGGCTTATAGGGACGATCCAGATTTGGAAAATTTATTATTCAACGAGTTCTTCGCTTCTGCAGTTACTAAGGCCCAATCCGGTTGGAGAAGAACTATTGCCCTTGCTGCTACTTACGGTATTCCAACTCCAGCTTTCTCTACTGCTTTAGCGTTTTACGACGGCTATAGATCTGAGAGGCTACCAGCAAACTTGTTACAAGCGCAACGTGATTATTTTGGCGCTCATACATTTAGAATTTTACCTGAATGTGCTTCTGCCCATTTGCCAGTAGACAAGGATATTCATATCAATTGGACTGGGCACGGAGGTAATATATCTTCCTCAACCTACCAAGCTTAA","protein_sequence":"MSKAVGDLGLVGLAVMGQNLILNAADHGFTVVAYNRTQSKVDRFLANEAKGKSIIGATSIEDLVAKLKKPRKIMLLIKAGAPVDTLIKELVPHLDKGDIIIDGGNSHFPDTNRRYEELTKQGILFVGSGVSGGEDGARFGPSLMPGGSAEAWPHIKNIFQSIAAKSNGEPCCEWVGPAGSGHYVKMVHNGIEYGDMQLICEAYDIMKRIGRFTDKEISEVFDKWNTGVLDSFLIEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSAIKDERKRASKLLAGPTVPKDAIHDREQFVYDLEQALYASKIISYAQGFMLIREAARSYGWKLNNPAIALMWRGGCIIRSVFLAEITKAYRDDPDLENLLFNEFFASAVTKAQSGWRRTIALAATYGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTFRILPECASAHLPVDKDIHINWTGHGGNISSSTYQA"},{"created_at":"2011-05-27T07:05:44.000Z","updated_at":"2011-05-27T15:01:27.000Z","name":"Ribulose-phosphate 3-epimerase","uniprot_id":"P46969","uniprot_name":"RPE_YEAST","enzyme":true,"transporter":false,"gene_name":"RPE1","num_residues":238,"molecular_weight":"25966.90039","theoretical_pi":"6.23","general_function":"Involved in catalytic activity","specific_function":"Involved in the protective response to oxidative stress","reactions":[{"id":1955,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2800,"direction":"\u003e","locations":"Cytoplasm","altext":"D-ribulose 5-phosphate = D-xylulose 5-phosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":14080,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006507","source":"Smpdb"},{"id":14081,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006509","source":"Smpdb"},{"id":14082,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R007094","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm","genbank_gene_id":"AY557858","genbank_protein_id":"45269607","gene_card_id":"RPE1","chromosome_location":"chromosome 10","locus":"YJL121C","synonyms":["Pentose-5-phosphate 3-epimerase","PPE","RPE"],"enzyme_classes":["5.1.3.1"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" isomerase activity"},{"category":"Function","description":" racemase and epimerase activity"},{"category":"Function","description":" racemase and epimerase activity, acting on carbohydrates and derivatives"},{"category":"Function","description":" ribulose-phosphate 3-epimerase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" primary metabolic process"},{"category":"Process","description":" carbohydrate metabolic process"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"Ribul_P_3_epim","identifier":"PF00834"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Pentose and glucuronate interconversions","kegg_map_id":"00040"},{"name":"Riboneogenesis","kegg_map_id":null},{"name":"xylitol degradation","kegg_map_id":null}],"gene_sequence":"ATGGTCAAACCAATTATAGCTCCCAGTATCCTTGCTTCTGACTTCGCCAACTTGGGTTGCGAATGTCATAAGGTCATCAACGCCGGCGCAGATTGGTTACATATCGATGTCATGGACGGCCATTTTGTTCCAAACATTACTCTGGGCCAACCAATTGTTACCTCCCTACGTCGTTCTGTGCCACGCCCTGGCGATGCTAGCAACACAGAAAAGAAGCCCACTGCGTTCTTCGATTGTCACATGATGGTTGAAAATCCTGAAAAATGGGTCGACGATTTTGCTAAATGTGGTGCTGACCAATTTACGTTCCACTACGAGGCCACACAAGACCCTTTGCATTTAGTTAAGTTGATTAAGTCTAAGGGCATCAAAGCTGCATGCGCCATCAAACCTGGTACTTCTGTTGACGTTTTATTTGAACTAGCTCCTCATTTGGATATGGCTCTTGTTATGACTGTGGAACCTGGGTTTGGAGGCCAAAAATTCATGGAAGACATGATGCCAAAAGTGGAAACTTTGAGAGCCAAGTTCCCCCATTTGAATATCCAAGTCGATGGTGGTTTGGGCAAGGAGACCATCCCGAAAGCCGCCAAAGCCGGTGCCAACGTTATTGTCGCTGGTACCAGTGTTTTCACTGCAGCTGACCCGCACGATGTTATCTCCTTCATGAAAGAAGAAGTCTCGAAGGAATTGCGTTCTAGAGATTTGCTAGATTAG","protein_sequence":"MVKPIIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHLVKLIKSKGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEVSKELRSRDLLD"}]}