{"ymdb_id":"YMDB00814","created_at":"2011-05-29T18:55:16.000Z","updated_at":"2016-09-12T20:56:47.000Z","name":"all-trans-pentaprenyl diphosphate","cas":null,"state":"Solid","melting_point":null,"description":"all-trans-Pentaprenyl diphosphate (or geranylfarnesyl diphosphate) is a polyprenol. Prenol lipids are synthesized from the 5-carbon precursors isopentenyl diphosphate and dimethylallyl diphosphate that are produced mainly via the mevalonic acid pathway. Simple isoprenoids like Nonadecaprenyl diphosphate are formed by the successive addition of C5 units.[Wikipedia]","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":null,"synthesis_reference":null,"chebi_id":"16818","hmdb_id":null,"kegg_id":"C04217","pubchem_id":"25244051","cs_id":"24808139","foodb_id":null,"wikipedia_link":null,"biocyc_id":"ALL-TRANS-PENTAPRENYL-DIPHOSPHATE","iupac":"{[hydroxy({[(2E,6E,10E,14E)-3,7,11,15,19-pentamethylicosa-2,6,10,14,18-pentaen-1-yl]oxy})phosphoryl]oxy}phosphonic acid","traditional_iupac":"geranylfarnesyl diphosphate","logp":"6.936161610666666","pka":"3.1843406094078315","alogps_solubility":"1.23e-03 g/l","alogps_logp":"4.88","alogps_logs":"-5.63","acceptor_count":"5","donor_count":"3","rotatable_bond_count":"17","polar_surface_area":"113.29000000000002","refractivity":"144.33570000000003","polarizability":"57.602275585429254","formal_charge":"0","physiological_charge":"-2","pka_strongest_basic":null,"pka_strongest_acidic":"1.7672186885241006","bioavailability":"0","number_of_rings":"0","rule_of_five":"0","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":["(2E,6E,10E,14E)-geranylfarnesyl diphosphate","2-trans,6-trans,10-trans,14-trans-geranylfarnesyl diphosphate","all-trans-farnesylgeranyl diphosphate","all-trans-farnesylgeranyl pyrophosphate","all-trans-geranylfarnesyl diphosphate","all-trans-geranylfarnesyl pyrophosphate","all-trans-Pentaprenyl diphosphate","Geranylfarnesyl diphosphate"],"pathways":[],"growth_conditions":[],"references":[{"pubmed_id":21062828,"citation":"Scheer, M., Grote, A., Chang, A., Schomburg, I., Munaretto, C., Rother, M., Sohngen, C., Stelzer, M., Thiele, J., Schomburg, D. (2011). \"BRENDA, the enzyme information system in 2011.\" Nucleic Acids Res 39:D670-D676."}],"proteins":[]}