{"ymdb_id":"YMDB00797","created_at":"2011-05-29T18:53:54.000Z","updated_at":"2016-09-08T18:35:55.000Z","name":"udp-galactose","cas":"2956-16-3","state":"Solid","melting_point":null,"description":"Uridine diphosphate galactose (UDP-galactose) is an intermediate in the production of polysaccharides. It is also important in nucleotide sugars metabolism. It is the substrate for the transferase B4GALT5.","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":null,"synthesis_reference":null,"chebi_id":"693249","hmdb_id":"HMDB00302","kegg_id":"C00052","pubchem_id":"18068","cs_id":"24655250","foodb_id":null,"wikipedia_link":"Uridine_diphosphate_galactose","biocyc_id":"UDP-GLACTOSE","iupac":"[({[(2R,3S,4R,5S)-5-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid","traditional_iupac":"{[(2R,3S,4R,5S)-5-(2,6-dioxo-1,3-dihydropyrimidin-4-yl)-3,4-dihydroxyoxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyphosphinic acid","logp":"-5.641130389333335","pka":"3.156329054804838","alogps_solubility":"1.23e+01 g/l","alogps_logp":"-1.53","alogps_logs":"-1.66","acceptor_count":"14","donor_count":"10","rotatable_bond_count":"9","polar_surface_area":"300.33","refractivity":"107.56219999999996","polarizability":"45.7653068247066","formal_charge":"0","physiological_charge":"-2","pka_strongest_basic":"-3.6496403268658693","pka_strongest_acidic":"1.7326026081436892","bioavailability":"0","number_of_rings":"3","rule_of_five":"0","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"1","synonyms":["GALACTOSE-URIDINE-5'-DIPHOSPHATE","GDU","Udp galactose","UDP-a-D-Galactose","Udp-alpha-d-galactose","UDP-alpha-delta-Galactose","udp-d-galactopyranose","udp-d-galactose","Udp-delta-galactopyranose","UDP-delta-galactose","UDP-Gal","UDP-galactopyranose","UDP-galactose","Udpgal","UDPgalactose","UPG","Uridine 5'-(alpha-D-galactopyranosyl pyrophosphate)","Uridine 5'-(alpha-delta-galactopyranosyl pyrophosphate)","uridine 5'-[3-(D-galactopyranosyl) dihydrogen diphosphate]","Uridine 5'-diphosphate galactose","Uridine 5'-diphosphogalactose","Uridine 5'-pyrophosphate a-D-galactopyranosyl ester","Uridine 5'-pyrophosphate a-D-galactosyl ester","Uridine 5'-pyrophosphate a-delta-galactopyranosyl ester","Uridine 5'-pyrophosphate a-delta-galactosyl ester","Uridine 5'-pyrophosphate alpha-D-galactosyl ester","Uridine 5'-pyrophosphate alpha-delta-galactosyl ester","Uridine 5'-pyrophosphate D-galactosyl ester","Uridine diphosphate galactose","Uridine diphosphate-D-galactose","Uridine diphosphate-delta-galactose","Uridine diphosphate-galactose","Uridine diphosphogalactose","Uridine pyrophosphate a-D-galactopyranosyl ester","Uridine pyrophosphate a-delta-galactopyranosyl ester","Uridine pyrophosphate alpha-d-galactopyranosyl ester","Uridine pyrophosphate alpha-delta-galactopyranosyl ester","Uridine pyrophosphogalactose","Uridinediphosphate galactose","Uridinediphosphogalactose"],"pathways":[{"name":"Amino sugar and nucleotide sugar metabolism","kegg_map_id":"00520"},{"name":"Galactose metabolism","kegg_map_id":"00052"}],"growth_conditions":[],"references":[{"pubmed_id":21051339,"citation":"UniProt Consortium (2011). \"Ongoing and future developments at the Universal Protein Resource.\" Nucleic Acids Res 39:D214-D219."},{"pubmed_id":21062828,"citation":"Scheer, M., Grote, A., Chang, A., Schomburg, I., Munaretto, C., Rother, M., Sohngen, C., Stelzer, M., Thiele, J., Schomburg, D. (2011). \"BRENDA, the enzyme information system in 2011.\" Nucleic Acids Res 39:D670-D676."},{"pubmed_id":14158615,"citation":"DOUGLAS, H. C., HAWTHORNE, D. C. (1964). \"ENZYMATIC EXPRESSION AND GENETIC LINKAGE OF GENES CONTROLLING GALACTOSE UTILIZATION IN SACCHAROMYCES.\" Genetics 49:837-844."}],"proteins":[{"created_at":"2011-05-24T19:46:41.000Z","updated_at":"2011-05-27T14:55:58.000Z","name":"Galactose-1-phosphate uridylyltransferase","uniprot_id":"P08431","uniprot_name":"GAL7_YEAST","enzyme":true,"transporter":false,"gene_name":"GAL7","num_residues":366,"molecular_weight":"42384.69922","theoretical_pi":"7.64","general_function":"Involved in UDP-glucose:hexose-1-phosphate uridylyltransferase activity","specific_function":"UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose","reactions":[{"id":1559,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2032,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2271,"direction":"\u003e","locations":null,"altext":"UDP-glucose + alpha-D-galactose 1-phosphate = alpha-D-glucose 1-phosphate + UDP-galactose.","export":false,"pw_reaction_id":null,"source":null},{"id":3836,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006360","source":"Smpdb"},{"id":3837,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006438","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"X81324","genbank_protein_id":"587574","gene_card_id":"GAL7","chromosome_location":"chromosome 2","locus":"YBR018C","synonyms":["Gal-1-P uridylyltransferase","UDP-glucose--hexose-1-phosphate uridylyltransferase"],"enzyme_classes":["2.7.7.12"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" zinc ion binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" nucleotidyltransferase activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" uridylyltransferase activity"},{"category":"Function","description":" UDP-glucose:hexose-1-phosphate uridylyltransferase activity"},{"category":"Function","description":" transferase activity, transferring phosphorus-containing groups"},{"category":"Function","description":" binding"},{"category":"Function","description":" ion binding"},{"category":"Function","description":" cation binding"},{"category":"Function","description":" metal ion binding"},{"category":"Function","description":" transition metal ion binding"},{"category":"Process","description":" monosaccharide metabolic process"},{"category":"Process","description":" hexose metabolic process"},{"category":"Process","description":" galactose metabolic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" small molecule metabolic process"},{"category":"Process","description":" alcohol metabolic process"}],"pfams":[{"name":"GalP_UDP_tr_C","identifier":"PF02744"},{"name":"GalP_UDP_transf","identifier":"PF01087"}],"pathways":[{"name":"Galactose metabolism","kegg_map_id":"00052"},{"name":"Amino sugar and nucleotide sugar metabolism","kegg_map_id":"00520"}],"gene_sequence":"ATGACTGCTGAAGAATTTGATTTTTCTAGCCATTCCCATAGACGTTACAATCCACTAACCGATTCATGGATCTTAGTTTCTCCACACAGAGCTAAAAGACCTTGGTTAGGTCAACAGGAGGCTGCTTACAAGCCCACAGCTCCATTGTATGATCCAAAATGCTATCTATGTCCTGGTAACAAAAGAGCTACTGGTAACCTAAACCCAAGATATGAATCAACGTATATTTTCCCCAATGATTATGCTGCCGTTAGGCTCGATCAACCTATTTTACCACAGAATGATTCCAATGAGGATAATCTTAAAAATAGGCTGCTTAAAGTGCAATCTGTGAGAGGCAATTGTTTCGTCATATGTTTTAGCCCCAATCATAATCTAACCATTCCACAAATGAAACAATCAGATCTGGTTCATATTGTTAATTCTTGGCAAGCATTGACTGACGATCTCTCCAGAGAAGCAAGAGAAAATCATAAGCCTTTCAAATATGTCCAAATATTTGAAAACAAAGGTACAGCCATGGGTTGTTCCAACTTACATCCACATGGCCAAGCTTGGTGCTTAGAATCCATCCCTAGTGAAGTTTCGCAAGAATTGAAATCTTTTGATAAATATAAACGTGAACACAATACTGATTTGTTTGCCGATTACGTCAAATTAGAATCAAGAGAGAAGTCAAGAGTCGTAGTGGAGAATGAATCCTTTATTGTTGTTGTTCCATACTGGGCCATCTGGCCATTTGAGACCTTGGTCATTTCAAAGAAGAAGCTTGCCTCAATTAGCCAATTTAACCAAATGGTGAAGGAGGACCTCGCCTCGATTTTAAAGCAACTAACTATTAAGTATGATAATTTATTTGAAACGAGTTTCCCATACTCAATGGGTATCCATCAGGCTCCTTTGAATGCGACTGGTGATGAATTGAGTAATAGTTGGTTTCACATGCATTTCTACCCACCTTTACTGAGATCAGCTACTGTTCGGAAATTCTTGGTTGGTTTTGAATTGTTAGGTGAGCCTCAAAGAGATTTAACTTCGGAACAAGCTGCTGAAAAACTAAGAAATTTAGATGGTCAGATTCATTATCTACAAAGACTGTAA","protein_sequence":"MTAEEFDFSSHSHRRYNPLTDSWILVSPHRAKRPWLGQQEAAYKPTAPLYDPKCYLCPGNKRATGNLNPRYESTYIFPNDYAAVRLDQPILPQNDSNEDNLKNRLLKVQSVRGNCFVICFSPNHNLTIPQMKQSDLVHIVNSWQALTDDLSREARENHKPFKYVQIFENKGTAMGCSNLHPHGQAWCLESIPSEVSQELKSFDKYKREHNTDLFADYVKLESREKSRVVVENESFIVVVPYWAIWPFETLVISKKKLASISQFNQMVKEDLASILKQLTIKYDNLFETSFPYSMGIHQAPLNATGDELSNSWFHMHFYPPLLRSATVRKFLVGFELLGEPQRDLTSEQAAEKLRNLDGQIHYLQRL"},{"created_at":"2011-05-27T02:42:00.000Z","updated_at":"2011-05-27T15:01:18.000Z","name":"Bifunctional protein GAL10","uniprot_id":"P04397","uniprot_name":"GAL10_YEAST","enzyme":true,"transporter":false,"gene_name":"GAL10","num_residues":699,"molecular_weight":"78194.70313","theoretical_pi":"5.8","general_function":"Involved in isomerase activity","specific_function":"Mutarotase converts alpha-aldose to the beta-anomer. It is active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose","reactions":[{"id":2031,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2686,"direction":"\u003e","locations":null,"altext":"UDP-glucose = UDP-galactose.","export":false,"pw_reaction_id":null,"source":null},{"id":2687,"direction":"\u003e","locations":null,"altext":"Alpha-D-glucose = beta-D-glucose.","export":false,"pw_reaction_id":null,"source":null},{"id":3833,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006358","source":"Smpdb"},{"id":3834,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006361","source":"Smpdb"},{"id":4139,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006437","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":"1Z45","cellular_location":null,"genbank_gene_id":"Z35888","genbank_protein_id":"536222","gene_card_id":"GAL10","chromosome_location":"chromosome 2","locus":"YBR019C","synonyms":["UDP-glucose 4-epimerase","Galactowaldenase","Aldose 1-epimerase","Galactose mutarotase"],"enzyme_classes":["5.1.3.2","5.1.3.3"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" cofactor binding"},{"category":"Function","description":" coenzyme binding"},{"category":"Function","description":" isomerase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" racemase and epimerase activity"},{"category":"Function","description":" racemase and epimerase activity, acting on carbohydrates and derivatives"},{"category":"Function","description":" UDP-glucose 4-epimerase activity"},{"category":"Function","description":" binding"},{"category":"Function","description":" carbohydrate binding"},{"category":"Process","description":" galactose metabolic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" cellular metabolic process"},{"category":"Process","description":" primary metabolic process"},{"category":"Process","description":" carbohydrate metabolic process"},{"category":"Process","description":" small molecule metabolic process"},{"category":"Process","description":" alcohol metabolic process"},{"category":"Process","description":" monosaccharide metabolic process"},{"category":"Process","description":" hexose metabolic process"}],"pfams":[{"name":"Epimerase","identifier":"PF01370"},{"name":"Aldose_epim","identifier":"PF01263"}],"pathways":[{"name":"Glycolysis / Gluconeogenesis","kegg_map_id":"00010"},{"name":"Amino sugar and nucleotide sugar metabolism","kegg_map_id":"00520"},{"name":"Ethanol fermentation","kegg_map_id":null}],"gene_sequence":"ATGACAGCTCAGTTACAAAGTGAAAGTACTTCTAAAATTGTTTTGGTTACAGGTGGTGCTGGATACATTGGTTCACACACTGTGGTAGAGCTAATTGAGAATGGATATGACTGTGTTGTTGCTGATAACCTGTCGAATTCAACTTATGATTCTGTAGCCAGGTTAGAGGTCTTGACCAAGCATCACATTCCCTTCTATGAGGTTGATTTGTGTGACCGAAAAGGTCTGGAAAAGGTTTTCAAAGAATATAAAATTGATTCGGTAATTCACTTTGCTGGTTTAAAGGCTGTAGGTGAATCTACACAAATCCCGCTGAGATACTATCACAATAACATTTTGGGAACTGTCGTTTTATTAGAGTTAATGCAACAATACAACGTTTCCAAATTTGTTTTTTCATCTTCTGCTACTGTCTATGGTGATGCTACGAGATTCCCAAATATGATTCCTATCCCAGAAGAATGTCCCTTAGGGCCTACTAATCCGTATGGTCATACGAAATACGCCATTGAGAATATCTTGAATGATCTTTACAATAGCGACAAAAAAAGTTGGAAGTTTGCTATCTTGCGTTATTTTAACCCAATTGGCGCACATCCCTCTGGATTAATCGGAGAAGATCCGCTAGGTATACCAAACAATTTGTTGCCATATATGGCTCAAGTAGCTGTTGGTAGGCGCGAGAAGCTTTACATCTTCGGAGACGATTATGATTCCAGAGATGGTACCCCGATCAGGGATTATATCCACGTAGTTGATCTAGCAAAAGGTCATATTGCAGCCCTGCAATACCTAGAGGCCTACAATGAAAATGAAGGTTTGTGTCGTGAGTGGAACTTGGGTTCCGGTAAAGGTTCTACAGTTTTTGAAGTTTATCATGCATTCTGCAAAGCTTCTGGTATTGATCTTCCATACAAAGTTACGGGCAGAAGAGCAGGTGATGTTTTGAACTTGACGGCTAAACCAGATAGGGCCAAACGCGAACTGAAATGGCAGACCGAGTTGCAGGTTGAAGACTCCTGCAAGGATTTATGGAAATGGACTACTGAGAATCCTTTTGGTTACCAGTTAAGGGGTGTCGAGGCCAGATTTTCCGCTGAAGATATGCGTTATGACGCAAGATTTGTGACTATTGGTGCCGGCACCAGATTTCAAGCCACGTTTGCCAATTTGGGCGCCAGCATTGTTGACCTGAAAGTGAACGGACAATCAGTTGTTCTTGGCTATGAAAATGAGGAAGGGTATTTGAATCCTGATAGTGCTTATATAGGCGCCACGATCGGCAGGTATGCTAATCGTATTTCGAAGGGTAAGTTTAGTTTATGCAACAAAGACTATCAGTTAACCGTTAATAACGGCGTTAATGCGAATCATAGTAGTATCGGTTCTTTCCACAGAAAAAGATTTTTGGGACCCATCATTCAAAATCCTTCAAAGGATGTTTTTACCGCCGAGTACATGCTGATAGATAATGAGAAGGACACCGAATTTCCAGGTGATCTATTGGTAACCATACAGTATACTGTGAACGTTGCCCAAAAAAGTTTGGAAATGGTATATAAAGGTAAATTGACTGCTGGTGAAGCGACGCCAATAAATTTAACAAATCATAGTTATTTCAATCTGAACAAGCCATATGGAGACACTATTGAGGGTACGGAGATTATGGTGCGTTCAAAAAAATCTGTTGATGTCGACAAAAACATGATTCCTACGGGTAATATCGTCGATAGAGAAATTGCTACCTTTAACTCTACAAAGCCAACGGTCTTAGGCCCCAAAAATCCCCAGTTTGATTGTTGTTTTGTGGTGGATGAAAATGCTAAGCCAAGTCAAATCAATACTCTAAACAATGAATTGACGCTTATTGTCAAGGCTTTTCATCCCGATTCCAATATTACATTAGAAGTTTTAAGTACAGAGCCAACTTATCAATTTTATACCGGTGATTTCTTGTCTGCTGGTTACGAAGCAAGACAAGGTTTTGCAATTGAGCCTGGTAGATACATTGATGCTATCAATCAAGAGAACTGGAAAGATTGTGTAACCTTGAAAAACGGTGAAACTTACGGGTCCAAGATTGTCTACAGATTTTCCTGA","protein_sequence":"MTAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQLRGVEARFSAEDMRYDARFVTIGAGTRFQATFANLGASIVDLKVNGQSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEMVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPTVLGPKNPQFDCCFVVDENAKPSQINTLNNELTLIVKAFHPDSNITLEVLSTEPTYQFYTGDFLSAGYEARQGFAIEPGRYIDAINQENWKDCVTLKNGETYGSKIVYRFS"}]}