{"ymdb_id":"YMDB00781","created_at":"2011-05-29T18:52:37.000Z","updated_at":"2016-09-12T20:54:20.000Z","name":"1-(sn-glycero-3-phospho)-1D-myo-inositol","cas":null,"state":"Solid","melting_point":null,"description":"1-(sn-Glycero-3-phospho)-1D-myo-inositol (glycerophosphoinositol) is produced through deacylation of phosphatidylinositol by the enzyme phospholipase B. Glycerophosphoinositols are ubiquitous phosphoinositide metabolites involved in the control of several cell functions. ","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":"extracellular;cytoplasm","synthesis_reference":null,"chebi_id":"18321","hmdb_id":null,"kegg_id":"C01225","pubchem_id":"45480544","cs_id":"21864850","foodb_id":null,"wikipedia_link":null,"biocyc_id":null,"iupac":"[(2S)-2,3-dihydroxypropoxy]({[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy})phosphinic acid","traditional_iupac":"(2S)-2,3-dihydroxypropoxy[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxyphosphinic acid","logp":"-4.848051914666666","pka":"12.338351990720948","alogps_solubility":"4.09e+01 g/l","alogps_logp":"-2.49","alogps_logs":"-0.91","acceptor_count":"9","donor_count":"8","rotatable_bond_count":"6","polar_surface_area":"197.36999999999998","refractivity":"63.385000000000005","polarizability":"28.672438907216907","formal_charge":"0","physiological_charge":"-1","pka_strongest_basic":"-2.968964768452052","pka_strongest_acidic":"1.8335431742771062","bioavailability":"1","number_of_rings":"1","rule_of_five":"0","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":["1-(sn-glycero-3-Phospho)-1D-myo-inositol","sn-glycero-3-Phospho-1-inositol"],"pathways":[],"growth_conditions":[],"references":[{"pubmed_id":18846089,"citation":"Herrgard, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Bluthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novere, N., Li, P., Liebermeister, W., Mo, M. L., Oliveira, A. P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasic, I., Weichart, D., Brent, R., Broomhead, D. S., Westerhoff, H. V., Kirdar, B., Penttila, M., Klipp, E., Palsson, B. O., Sauer, U., Oliver, S. G., Mendes, P., Nielsen, J., Kell, D. B. (2008). \"A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.\" Nat Biotechnol 26:1155-1160."},{"pubmed_id":15145930,"citation":"Almaguer, C., Cheng, W., Nolder, C., Patton-Vogt, J. (2004). \"Glycerophosphoinositol, a novel phosphate source whose transport is regulated by multiple factors in Saccharomyces cerevisiae.\" J Biol Chem 279:31937-31942."}],"proteins":[{"created_at":"2011-05-27T09:27:35.000Z","updated_at":"2011-05-29T05:06:49.000Z","name":"Probable metabolite transport protein GIT1","uniprot_id":"P25346","uniprot_name":"GIT1_YEAST","enzyme":false,"transporter":true,"gene_name":"GIT1","num_residues":518,"molecular_weight":"57321.19922","theoretical_pi":"8.68","general_function":"Involved in transmembrane transporter activity","specific_function":null,"reactions":[],"signal_regions":"None","transmembrane_regions":"45-65;92-112;115-136;139-159;185-205;217-237;269-289;307-327;336-356;361-381;400-420;431-451","pdb_id":null,"cellular_location":"Membrane; Multi-pass membrane protein","genbank_gene_id":"X59720","genbank_protein_id":"1907236","gene_card_id":"GIT1","chromosome_location":"chromosome 3","locus":"YCR098C","synonyms":[],"enzyme_classes":[],"go_classes":[{"category":"Component","description":" cell part"},{"category":"Component","description":" membrane"},{"category":"Component","description":" membrane part"},{"category":"Component","description":" intrinsic to membrane"},{"category":"Component","description":" integral to membrane"},{"category":"Function","description":" transporter activity"},{"category":"Process","description":" transmembrane transport"},{"category":"Process","description":" establishment of localization"},{"category":"Process","description":" transport"}],"pfams":[{"name":"Sugar_tr","identifier":"PF00083"}],"pathways":[],"gene_sequence":"ATGGAAGACAAAGATATCACATCGGTAAATGAGAAGGAAGTGAACGAGAACACTAATCCTAGAATAATAAAATATGATGCCGAGAGGCGTGCAACCCGTACTGAAACCTCAAAGAAAGATAAATGGAAAAACATAGTTACAATCATTGCGTCCGGTTTTGCTCTGATAAGTGATGGTTACGTAAATGGTTCAATGAGTATGCTAAACAAGGTTTTTGTTATGGAGTACGGTAAGAAAAACTATAGCTCAAAAGTGTCGACTAGAGTTTCCAACGCAGCCCTAGTTGGTATTATTTTTGGCCAATTCTTTATGGGTATCGCTGCTGATTATTATAGTAGAAAATCTTGTATCCTTGTGGCCACTGCTATCTTGGTTATTGGTAGTGCTCTGTGTGCTGCCTCTCACGGTACTACTGTACCTGGCATGTTTTGGATGTTAACAGTTATGAGAGGTTTGGTAGGTATTGGTGTTGGTGCAGAATATCCTACCAGTACATTAAGTGCTAATGAGTCTGCTAATGAATATACCACTACCAAAAGAGGTGGTATCCTGGTTATGGTGACAAATTTGCCACTAGCCTTCGGTGGTCCATTTGCTACGATCATCTTTTTAATCGTCTACAAAATCTGTTCAGGAACAAAACATTTAGAGGCGATCTGGAGGACTGTTTTTGCAATAGGGTGCTTCTGGCCATTGAGTGTGTTCTATTTTAGATGGAAGACTGCTACTACAGAAGTCTATGAAAAAGGTAGAATCAAGAGAAATATACCATATTTCCTAGCATTGAAATTTTATTGGAAAAGGTTACTTGGTACATGTGGTACATGGTTTATGTATGATTTTGTTACCTTCCCAAATGGTATTTTCAGTTCAACAATTATCAGTTCCGTTATCAAGGACCAAAATGATTTAGTAAAAGTGGCAGAGTGGAACTTACTGTTGGGAGTTTTAGCTGTACTGGGTGTACCAATTGGTGCTTATCTGTCCGATCGTATTGGTCGTAAATATACGTTGATGTTTGGTTTCTCTGGGTACATCATCTTTGGTCTAATCATTGGATGTGCGTACGACCAATTGAAAAAAATCACCCCCTTGTTTATTATCTTCTACGCATTCATGAATATGTTAGGTAATGCTGGACCAGGTGATATGCTTGGTGTTATTAGTAGTGAAGCGTCAGCAACCGCTGTTAGAGGTGTTTTCTATGGTTTATCTGCTGTGACTGGTAAAATCGGTTCTGTAGTAGGCGTCGAATGTTTCCAACCCATTAGGGATAATTTGGGTGCAAGATGGACTTTTATTATTGCTGCAATTTGTGGTCTTATTGGTATCATTATTACATATTTCTTTGTTCCACATTCTCTTGAAAGCGATTTAATGAAGCAAGACGTTGAATTTCACAACTATTTGGTATCCAATGGCTGGACTGGTAAGATGGGATTTGATGAGACAGATGAAGAATCAATGGTTAGAACTATTGAAGTTGAAGAGAATGGTACTAATTGTAGTAAGAAAAACGCAGAAATAATTTCAGTCAGACAGGTCGATCAAAGTTGA","protein_sequence":"MEDKDITSVNEKEVNENTNPRIIKYDAERRATRTETSKKDKWKNIVTIIASGFALISDGYVNGSMSMLNKVFVMEYGKKNYSSKVSTRVSNAALVGIIFGQFFMGIAADYYSRKSCILVATAILVIGSALCAASHGTTVPGMFWMLTVMRGLVGIGVGAEYPTSTLSANESANEYTTTKRGGILVMVTNLPLAFGGPFATIIFLIVYKICSGTKHLEAIWRTVFAIGCFWPLSVFYFRWKTATTEVYEKGRIKRNIPYFLALKFYWKRLLGTCGTWFMYDFVTFPNGIFSSTIISSVIKDQNDLVKVAEWNLLLGVLAVLGVPIGAYLSDRIGRKYTLMFGFSGYIIFGLIIGCAYDQLKKITPLFIIFYAFMNMLGNAGPGDMLGVISSEASATAVRGVFYGLSAVTGKIGSVVGVECFQPIRDNLGARWTFIIAAICGLIGIIITYFFVPHSLESDLMKQDVEFHNYLVSNGWTGKMGFDETDEESMVRTIEVEENGTNCSKKNAEIISVRQVDQS"}]}