{"ymdb_id":"YMDB00650","created_at":"2011-05-29T18:40:23.000Z","updated_at":"2016-09-08T18:35:44.000Z","name":"alpha-D-ribose 5-phosphate","cas":"4300-28-1","state":"Solid","melting_point":null,"description":"D-Ribose 5-phosphate is an important intermediate metabolite in the pentose phosphate pathway and in the purine metabolism pathway. [KEGG]","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":"cytoplasm","synthesis_reference":null,"chebi_id":"18189","hmdb_id":"HMDB11734","kegg_id":"C00117","pubchem_id":"230","cs_id":"25946122","foodb_id":null,"wikipedia_link":"Ribose_5-phosphate","biocyc_id":"ARABINOSE-5P","iupac":"{[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy}phosphonic acid","traditional_iupac":"α-D-ribose 5-phosphate","logp":"-2.425770307333333","pka":"6.248502666590344","alogps_solubility":"3.36e+01 g/l","alogps_logp":"-2.07","alogps_logs":"-0.84","acceptor_count":"7","donor_count":"5","rotatable_bond_count":"3","polar_surface_area":"136.68","refractivity":"40.8338","polarizability":"18.250781635212405","formal_charge":"0","physiological_charge":"-2","pka_strongest_basic":"-3.680084519580305","pka_strongest_acidic":"1.2226866612133929","bioavailability":"1","number_of_rings":"1","rule_of_five":"1","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":["5-O-phosphono-alpha-D-ribofuranose","alpha-D-ribose 5-phosphate","arabinose-5-P","arabinose-5P","D-Arabinose 5-phosphate","d-ribose 5-phosphate","d-ribose-5-phosphate","ribose 5-phosphate"],"pathways":[{"name":"Purine metabolism","kegg_map_id":"00230"},{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Histidine Biosynthesis","kegg_map_id":null},{"name":"xylitol degradation","kegg_map_id":null},{"name":"Riboneogenesis","kegg_map_id":null}],"growth_conditions":[],"references":[{"pubmed_id":18846089,"citation":"Herrgard, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Bluthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novere, N., Li, P., Liebermeister, W., Mo, M. L., Oliveira, A. P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasic, I., Weichart, D., Brent, R., Broomhead, D. S., Westerhoff, H. V., Kirdar, B., Penttila, M., Klipp, E., Palsson, B. O., Sauer, U., Oliver, S. G., Mendes, P., Nielsen, J., Kell, D. B. (2008). \"A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.\" Nat Biotechnol 26:1155-1160."},{"pubmed_id":9763699,"citation":"Reuter, R., Naumann, M., Bar, J., Miosga, T., Kopperschlager, G. (1998). \"Ribose-5-phosphate isomerase from Saccharomyces cerevisiae: purification and molecular analysis of the enzyme.\" Bioseparation 7:107-115."}],"proteins":[{"created_at":"2011-05-26T16:53:27.000Z","updated_at":"2011-05-29T05:06:19.000Z","name":"Phosphoglucomutase-2","uniprot_id":"P37012","uniprot_name":"PGM2_YEAST","enzyme":true,"transporter":false,"gene_name":"PGM2","num_residues":569,"molecular_weight":"63088.0","theoretical_pi":"6.59","general_function":"Involved in intramolecular transferase activity, phosphotransferases","specific_function":"This enzyme participates in both the breakdown and synthesis of glucose. Can also act on mannose","reactions":[{"id":1863,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1881,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2451,"direction":"\u003e","locations":"Cytoplasm. 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Can also act on mannose","reactions":[{"id":1863,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1881,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2451,"direction":"\u003e","locations":"Cytoplasm. 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catalytic activity"},{"category":"Function","description":" binding"},{"category":"Function","description":" ion binding"},{"category":"Function","description":" cation binding"},{"category":"Function","description":" metal ion binding"},{"category":"Function","description":" magnesium ion binding"},{"category":"Function","description":" isomerase activity"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" primary metabolic process"},{"category":"Process","description":" carbohydrate metabolic process"}],"pfams":[{"name":"PGM_PMM_I","identifier":"PF02878"},{"name":"PGM_PMM_II","identifier":"PF02879"},{"name":"PGM_PMM_IV","identifier":"PF00408"},{"name":"PGM_PMM_III","identifier":"PF02880"}],"pathways":[{"name":"Glycolysis / Gluconeogenesis","kegg_map_id":"00010"},{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Galactose metabolism","kegg_map_id":"00052"},{"name":"Purine metabolism","kegg_map_id":"00230"},{"name":"Starch and sucrose metabolism","kegg_map_id":"00500"},{"name":"Amino sugar and nucleotide sugar metabolism","kegg_map_id":"00520"},{"name":"Leloir 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5-phosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":14085,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006510","source":"Smpdb"},{"id":14086,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006512","source":"Smpdb"},{"id":14087,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006513","source":"Smpdb"},{"id":14088,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R007089","source":"Smpdb"},{"id":14089,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R007092","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"X73532","genbank_protein_id":"313262","gene_card_id":"TKL2","chromosome_location":"chromosome 2","locus":"YBR117C","synonyms":["TK 2"],"enzyme_classes":["2.2.1.1"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" transferase activity, transferring aldehyde or ketonic groups"},{"category":"Function","description":" transketolase activity"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"Transket_pyr","identifier":"PF02779"},{"name":"Transketolase_C","identifier":"PF02780"},{"name":"Transketolase_N","identifier":"PF00456"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Riboneogenesis","kegg_map_id":null},{"name":"xylitol degradation","kegg_map_id":null}],"gene_sequence":"ATGGCACAGTTCTCCGACATTGATAAACTTGCGGTTTCCACTTTAAGATTACTTTCCGTTGACCAGGTGGAAAGCGCACAATCTGGCCACCCAGGTGCACCACTAGGATTGGCACCAGTTGCCCATGTAATTTTCAAGCAACTGCGCTGTAACCCTAACAATGAACATTGGATCAATAGAGACAGGTTTGTTCTGTCGAACGGTCACTCATGCGCTCTTCTGTACTCAATGCTCCATCTATTAGGATACGATTACTCTATCGAGGACTTGAGACAATTTAGACAAGTAAACTCAAGGACACCGGGTCATCCAGAATTCCACTCAGCGGGAGTGGAAATCACTTCCGGTCCGCTAGGCCAGGGTATCTCAAATGCTGTTGGTATGGCAATAGCGCAGGCCAACTTTGCCGCCACTTATAACGAGGATGGCTTTCCCATTTCCGACTCATATACGTTTGCTATTGTAGGGGATGGTTGCTTACAAGAGGGTGTTTCTTCGGAGACCTCTTCCTTAGCGGGACATCTGCAATTGGGTAACTTGATTACGTTTTATGACAGTAATAGCATTTCCATTGACGGTAAAACCTCGTACTCGTTCGACGAAGATGTTTTGAAGCGATACGAGGCATATGGTTGGGAAGTCATGGAAGTCGATAAAGGAGACGACGATATGGAATCCATTTCTAGCGCTTTGGAAAAGGCAAAACTATCGAAGGACAAGCCAACCATAATCAAGGTAACTACTACAATTGGATTTGGGTCCCTACAACAGGGTACTGCTGGTGTTCATGGGTCCGCTTTGAAGGCAGATGATGTTAAACAGTTGAAGAAGAGGTGGGGGTTTGACCCAAATAAATCATTTGTAGTACCTCAAGAGGTGTACGATTATTATAAGAAGACTGTTGTGGAACCCGGTCAAAAACTTAATGAGGAATGGGATAGGATGTTTGAAGAATACAAAACCAAATTTCCCGAGAAGGGTAAAGAATTGCAAAGAAGATTGAATGGTGAGTTACCGGAAGGTTGGGAAAAGCATTTACCGAAGTTTACTCCGGACGACGATGCTCTGGCAACAAGAAAGACATCCCAGCAGGTGCTGACGAACATGGTCCAAGTTTTGCCTGAATTGATCGGTGGTTCTGCCGATTTGACACCTTCGAATCTGACAAGGTGGGAAGGCGCGGTAGATTTCCAACCTCCCATTACCCAACTAGGTAACTATGCAGGAAGGTACATTAGATACGGTGTGAGGGAACACGGAATGGGTGCCATTATGAACGGTATCTCTGCCTTTGGTGCAAACTACAAGCCTTACGGTGGTACCTTTTTGAACTTCGTCTCTTATGCTGCAGGAGCCGTTAGGTTAGCCGCCTTGTCTGGTAATCCAGTCATTTGGGTTGCAACACATGACTCTATCGGGCTTGGTGAGGATGGTCCAACGCACCAACCTATTGAAACTCTGGCTCACTTGAGGGCTATTCCAAACATGCATGTATGGAGACCTGCTGATGGTAACGAAACTTCTGCTGCGTATTATTCTGCTATCAAATCTGGTCGAACACCATCTGTTGTGGCTTTATCACGACAGAATCTTCCTCAATTGGAGCATTCCTCTTTTGAAAAAGCCTTGAAGGGTGGCTATGTGATCCATGACGTGGAGAATCCTGATATTATCCTGGTGTCAACAGGATCAGAAGTCTCCATTTCTATAGATGCAGCCAAAAAATTGTACGATACTAAAAAAATCAAAGCAAGAGTTGTTTCCCTGCCAGACTTTTATACTTTTGACAGGCAAAGTGAAGAATACAGATTCTCTGTTCTACCAGACGGTGTTCCGATCATGTCCTTTGAAGTATTGGCTACTTCAAGCTGGGGTAAGTATGCTCATCAATCGTTCGGACTCGACGAATTTGGTCGTTCAGGCAAGGGGCCTGAAATTTACAAATTGTTCGATTTCACAGCGGACGGTGTTGCGTCAAGGGCTGAAAAGACAATCAATTACTACAAAGGAAAGCAGTTGCTTTCTCCTATGGGAAGAGCTTTCTAA","protein_sequence":"MAQFSDIDKLAVSTLRLLSVDQVESAQSGHPGAPLGLAPVAHVIFKQLRCNPNNEHWINRDRFVLSNGHSCALLYSMLHLLGYDYSIEDLRQFRQVNSRTPGHPEFHSAGVEITSGPLGQGISNAVGMAIAQANFAATYNEDGFPISDSYTFAIVGDGCLQEGVSSETSSLAGHLQLGNLITFYDSNSISIDGKTSYSFDEDVLKRYEAYGWEVMEVDKGDDDMESISSALEKAKLSKDKPTIIKVTTTIGFGSLQQGTAGVHGSALKADDVKQLKKRWGFDPNKSFVVPQEVYDYYKKTVVEPGQKLNEEWDRMFEEYKTKFPEKGKELQRRLNGELPEGWEKHLPKFTPDDDALATRKTSQQVLTNMVQVLPELIGGSADLTPSNLTRWEGAVDFQPPITQLGNYAGRYIRYGVREHGMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLAALSGNPVIWVATHDSIGLGEDGPTHQPIETLAHLRAIPNMHVWRPADGNETSAAYYSAIKSGRTPSVVALSRQNLPQLEHSSFEKALKGGYVIHDVENPDIILVSTGSEVSISIDAAKKLYDTKKIKARVVSLPDFYTFDRQSEEYRFSVLPDGVPIMSFEVLATSSWGKYAHQSFGLDEFGRSGKGPEIYKLFDFTADGVASRAEKTINYYKGKQLLSPMGRAF"},{"created_at":"2011-05-26T17:46:27.000Z","updated_at":"2011-05-27T15:01:02.000Z","name":"Transketolase 1","uniprot_id":"P23254","uniprot_name":"TKT1_YEAST","enzyme":true,"transporter":false,"gene_name":"TKL1","num_residues":680,"molecular_weight":"73805.0","theoretical_pi":"7.01","general_function":"Involved in catalytic activity","specific_function":"Sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-ribose 5-phosphate + D-xylulose 5-phosphate","reactions":[{"id":2017,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2018,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2477,"direction":"\u003e","locations":"","altext":"Sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-ribose 5-phosphate + D-xylulose 5-phosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":14085,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006510","source":"Smpdb"},{"id":14086,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006512","source":"Smpdb"},{"id":14087,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006513","source":"Smpdb"},{"id":14088,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R007089","source":"Smpdb"},{"id":14089,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R007092","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":"1GPU","cellular_location":null,"genbank_gene_id":"U51033","genbank_protein_id":"1230682","gene_card_id":"TKL1","chromosome_location":"chromosome 16","locus":"YPR074C","synonyms":["TK 1"],"enzyme_classes":["2.2.1.1"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" transferase activity, transferring aldehyde or ketonic groups"},{"category":"Function","description":" transketolase activity"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"Transket_pyr","identifier":"PF02779"},{"name":"Transketolase_C","identifier":"PF02780"},{"name":"Transketolase_N","identifier":"PF00456"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Riboneogenesis","kegg_map_id":null},{"name":"xylitol 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Active in heteromultimeric complexes with other 5-phosphoribose 1- diphosphate synthases (PRS2, PRS3, PRS4 and PRS5)","reactions":[{"id":1892,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2536,"direction":"\u003e","locations":"Cytoplasm","altext":"ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":4152,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006450","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm","genbank_gene_id":"X91067","genbank_protein_id":"984179","gene_card_id":"PRS5","chromosome_location":"chromosome 15","locus":"YOL061W","synonyms":["Phosphoribosyl pyrophosphate synthase 5"],"enzyme_classes":["2.7.6.1"],"go_classes":[{"category":"Component","description":" Not 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Active in heteromultimeric complexes with other 5-phosphoribose 1- diphosphate synthases (PRS2, PRS3, PRS4 and PRS5)","reactions":[{"id":1892,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2536,"direction":"\u003e","locations":"Cytoplasm","altext":"ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":4152,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006450","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm","genbank_gene_id":"AY692977","genbank_protein_id":"51013405","gene_card_id":"PRS2","chromosome_location":"chromosome 5","locus":"YER099C","synonyms":["Phosphoribosyl pyrophosphate synthase 2"],"enzyme_classes":["2.7.6.1"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" binding"},{"category":"Function","description":" ion binding"},{"category":"Function","description":" cation binding"},{"category":"Function","description":" metal ion binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" magnesium ion binding"},{"category":"Function","description":" transferase activity, transferring phosphorus-containing groups"},{"category":"Function","description":" diphosphotransferase activity"},{"category":"Function","description":" ribose phosphate diphosphokinase activity"},{"category":"Process","description":" biosynthetic process"},{"category":"Process","description":" nucleoside metabolic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" cellular biosynthetic process"},{"category":"Process","description":" nucleoside monophosphate metabolic process"},{"category":"Process","description":" nitrogen compound metabolic process"},{"category":"Process","description":" nucleoside monophosphate biosynthetic process"},{"category":"Process","description":" cellular nitrogen compound metabolic process"},{"category":"Process","description":" nucleotide biosynthetic process"},{"category":"Process","description":" nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"},{"category":"Process","description":" nucleobase, nucleoside and nucleotide metabolic process"},{"category":"Process","description":" nucleoside phosphate metabolic process"},{"category":"Process","description":" ribonucleoside monophosphate biosynthetic process"},{"category":"Process","description":" nucleotide metabolic process"}],"pfams":[{"name":"Pribosyltran","identifier":"PF00156"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Purine metabolism","kegg_map_id":"00230"},{"name":"Histidine Biosynthesis","kegg_map_id":null}],"gene_sequence":"ATGTCTACAAACAGTATTAAGTTGTTAGCTGGTAACTCACATCCTGGGCTTGCTGAGCTTATTTCCCAAAGGCTTGGTGTACCGTTATCTAAAGTGGGGGTATATCAGTATTCAAATAAAGAGACGTCTGTTACAATAGGGGAAAGCATTCGTGATGAAGACGTATATATCATCCAAACTGGTTACGGGGAACATGAAATCAACGATTTCTTAATGGAATTACTTATCTTAATTCACGCTTGTAAGACGGCATCAGTCAGAAGAATTACGGCAGTAATACCAAATTTCCCTTATGCTAGACAAGATAAGAAGGATAAATCGCGGGCGCCCATCACTGCGAAGCTGATTGCCAATCTTTTGGAAACTGCGGGTTGTGATCATGTTATTACTATGGATCTCCATGCTTCACAAATTCAAGGGTTTTTTCATATCCCGGTTGATAATTTATACGGTGAACCAAGTGTGTTGAATTACATAAGGACCAAAACAGATTTCAATAATGCGATACTGGTATCGCCTGATGCTGGTGGTGCGAAAAGGGTGGCTTCTTTAGCGGACAAGCTGGATATGAATTTTGCCTTGATTCATAAGGAGAGGCAAAAAGCTAATGAAGTTTCGCGAATGCTGCTTGTCGGTGATGTTGCTGGTAAGTCATGCTTGTTGATTGACGATATGGCTGACACGTGTGGTACGCTGGTGAAAGCCTGTGACACATTAATGGATCACGGTGCTAAGGAGGTTATCGCTATTGTCACACATGGTATATTTTCTGGCTCAGCTAGGGAGAAGTTAATAAATAGTAGGTTATCAAGAATTGTTTGCACCAACACGGTACCTGTTGATTTGGATTTGGACATTGTCGATCAGGTGGATATCAGCCCTACGATTGCAGAAGCTATCAGAAGATTGCATAATGGAGAATCAGTCTCATATTTATTTACACATGCGCCTGTTTAA","protein_sequence":"MSTNSIKLLAGNSHPGLAELISQRLGVPLSKVGVYQYSNKETSVTIGESIRDEDVYIIQTGYGEHEINDFLMELLILIHACKTASVRRITAVIPNFPYARQDKKDKSRAPITAKLIANLLETAGCDHVITMDLHASQIQGFFHIPVDNLYGEPSVLNYIRTKTDFNNAILVSPDAGGAKRVASLADKLDMNFALIHKERQKANEVSRMLLVGDVAGKSCLLIDDMADTCGTLVKACDTLMDHGAKEVIAIVTHGIFSGSAREKLINSRLSRIVCTNTVPVDLDLDIVDQVDISPTIAEAIRRLHNGESVSYLFTHAPV"},{"created_at":"2011-05-26T18:39:25.000Z","updated_at":"2011-05-27T15:01:05.000Z","name":"Ribose-phosphate pyrophosphokinase 1","uniprot_id":"P32895","uniprot_name":"KPR1_YEAST","enzyme":true,"transporter":false,"gene_name":"PRS1","num_residues":427,"molecular_weight":"47047.0","theoretical_pi":"5.47","general_function":"Involved in magnesium ion binding","specific_function":"5-phosphoribose 1-diphosphate synthase involved in nucleotide, histidine, and tryptophan biosynthesis. Active in heteromultimeric complexes with other 5-phosphoribose 1- diphosphate synthases (PRS2, PRS3, PRS4 and PRS5)","reactions":[{"id":1892,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2536,"direction":"\u003e","locations":"Cytoplasm","altext":"ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":4152,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006450","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm","genbank_gene_id":"L04130","genbank_protein_id":"172274","gene_card_id":"PRS1","chromosome_location":"chromosome 11","locus":"YKL181W","synonyms":["Phosphoribosyl pyrophosphate synthase 1"],"enzyme_classes":["2.7.6.1"],"go_classes":[{"category":"Component","description":" Not 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monophosphate biosynthetic process"},{"category":"Process","description":" nitrogen compound metabolic process"},{"category":"Process","description":" nucleotide biosynthetic process"},{"category":"Process","description":" cellular nitrogen compound metabolic process"},{"category":"Process","description":" nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"},{"category":"Process","description":" nucleobase, nucleoside and nucleotide metabolic process"},{"category":"Process","description":" ribonucleoside monophosphate biosynthetic process"},{"category":"Process","description":" nucleoside phosphate metabolic process"},{"category":"Process","description":" nucleotide metabolic process"}],"pfams":[],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Purine metabolism","kegg_map_id":"00230"},{"name":"Histidine Biosynthesis","kegg_map_id":null}],"gene_sequence":"ATGCGTAAGTGTAAAATTTTTGTTGGTAACTCTCACCCAGAGTTGGGTAATATGGTTTGCCAAAGATTAGGTATCGAACCAGCTCCATGTACATTAAAAAAATTTGCAAATGGTGAAACGTCAGTTCAAATCGGTGTATCTGTTCGTGACGAAGATGTGTATGTCATTCAATCTGGTTCTCCATCCATAAATGATGACATTATGGAACTGTTGATTTTAGTTTCTGCCTGTAGGGGCGGATCTGCTAGGAAAATTACAGCAGTCATTCCTCAATTTCCTTACTCTAAACAATGTAAAATGAAGAGACACAGAGGCGCTATTACTGCAAGGATGTTGGCCAATCTGTTGGTCATGGCTGGCGCTGATCATGTTGTGTCTATGGACCTTCATGCTTCTCAAATGCAGGGGTTTTTCACCAAACCAGTCGATAACCTATACGGGGGCCCTAGTTTAGCGAAATGGATTAGAGAAAATGTTGAAGACTATGAAGATGCAGTAGTTGTCTCTAAGAATCCAGGTGGTACTAAAAGAGTTACAGCCCTGGCGGATTCTTTGAAGATCAACTTTGCTATGATCCATACTGATCGTCGTCGTTCTAAGGATCTGTATTCTCAAAACAAGGATTTGCAACAACTAAAGTTGAGAAAGCAATCAATGTTGAGGAAAAATAGACCGATCATCAGACAAGGTGACCATCCAAATGAGGAGGAAAACATTATTTTAAGTAACGGTATTCAAACTGCTAGGATCCGTAACGGCCACGTTATCGGTGACGATGAGGCAGACGATGATGAAGACGCTATCTTAGAATCTGACAGCGAATTGCATTCTATTGATGGCTTAGACTCGCATGGCTTGGGCGGTACATATGATGCTGTCGACTCCGAAGACGAAGAGGAAATCCCAGTTCTCTATAGGGAACAACTGATTACATTGGTCGGAAACGTCCGTGGTCGCTCTGCCATCATTCTAGATGATATGATTGATAGACCTGGGTCATTTATTAGCGCTGCTGAACATTTGGTGCAAAATTGTGGTGCCAAAAAGGTTTATGTTGTTGCTACTCACGGTATATTCACTGGAGACTGTTTGGAAGAACTTGAAAAGTCCGATGCCATTGACACAATTGTGGTCACAAATACATATCCGATTTCTGGCGAACGCATAGCTGGGTCCAAGAAATTGGTTACTATCGATGTTTCTCCAATTTTCGCAGAATGTATCCGTCGTGATCATTATGGTGAGAGTATTTCCGTTTTATTTGACTCTTTGGCAGCTCTGTAA","protein_sequence":"MRKCKIFVGNSHPELGNMVCQRLGIEPAPCTLKKFANGETSVQIGVSVRDEDVYVIQSGSPSINDDIMELLILVSACRGGSARKITAVIPQFPYSKQCKMKRHRGAITARMLANLLVMAGADHVVSMDLHASQMQGFFTKPVDNLYGGPSLAKWIRENVEDYEDAVVVSKNPGGTKRVTALADSLKINFAMIHTDRRRSKDLYSQNKDLQQLKLRKQSMLRKNRPIIRQGDHPNEEENIILSNGIQTARIRNGHVIGDDEADDDEDAILESDSELHSIDGLDSHGLGGTYDAVDSEDEEEIPVLYREQLITLVGNVRGRSAIILDDMIDRPGSFISAAEHLVQNCGAKKVYVVATHGIFTGDCLEELEKSDAIDTIVVTNTYPISGERIAGSKKLVTIDVSPIFAECIRRDHYGESISVLFDSLAAL"},{"created_at":"2011-05-26T18:58:30.000Z","updated_at":"2011-05-27T15:01:05.000Z","name":"Ribose-phosphate pyrophosphokinase 3","uniprot_id":"P38689","uniprot_name":"KPR3_YEAST","enzyme":true,"transporter":false,"gene_name":"PRS3","num_residues":320,"molecular_weight":"35123.30078","theoretical_pi":"8.47","general_function":"Involved in magnesium ion binding","specific_function":"5-phosphoribose 1-diphosphate synthase involved in nucleotide, histidine, and tryptophan biosynthesis. Active in heteromultimeric complexes with other 5-phosphoribose 1- diphosphate synthases (PRS2, PRS3, PRS4 and PRS5)","reactions":[{"id":1892,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2536,"direction":"\u003e","locations":"Cytoplasm","altext":"ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":4152,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006450","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm","genbank_gene_id":"AY693094","genbank_protein_id":"51013639","gene_card_id":"PRS3","chromosome_location":"chromosome 8","locus":"YHL011C","synonyms":["Phosphoribosyl pyrophosphate synthase 3"],"enzyme_classes":["2.7.6.1"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" binding"},{"category":"Function","description":" ion binding"},{"category":"Function","description":" cation binding"},{"category":"Function","description":" metal ion binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" magnesium ion binding"},{"category":"Function","description":" transferase activity, transferring phosphorus-containing groups"},{"category":"Function","description":" diphosphotransferase activity"},{"category":"Function","description":" ribose phosphate diphosphokinase activity"},{"category":"Process","description":" biosynthetic process"},{"category":"Process","description":" nucleoside metabolic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" cellular biosynthetic process"},{"category":"Process","description":" nucleoside monophosphate metabolic process"},{"category":"Process","description":" nitrogen compound metabolic process"},{"category":"Process","description":" nucleoside monophosphate biosynthetic process"},{"category":"Process","description":" cellular nitrogen compound metabolic process"},{"category":"Process","description":" nucleotide biosynthetic process"},{"category":"Process","description":" nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"},{"category":"Process","description":" nucleobase, nucleoside and nucleotide metabolic process"},{"category":"Process","description":" nucleoside phosphate metabolic process"},{"category":"Process","description":" ribonucleoside monophosphate biosynthetic process"},{"category":"Process","description":" nucleotide metabolic process"}],"pfams":[{"name":"Pribosyltran","identifier":"PF00156"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Purine metabolism","kegg_map_id":"00230"},{"name":"Histidine Biosynthesis","kegg_map_id":null}],"gene_sequence":"ATGCCAACAAATTCCATCAAATTATTAGCACCAGATGTCCACCGAGGTTTAGCTGAACTTGTTGCCAAAAGGCTAGGTCTACAGTTAACAAGCAGCAAACTAAAGAGAGATCCAACCGGTGAGGTTTCCTTTTCTATTGGAGAATCTGTTAGGGACCAAGATATCTTTATCATCACGCAAATTGGCTCTGGTGTCGTGAACGATCGTGTTCTAGAACTACTGATCATGATCAATGCTTCGAAGACTGCGTCTGCAAGAAGAATCACTGCTATTATTCCAAATTTCCCATATGCAAGACAAGATAGAAAGGATAAGTCTCGTGCTCCTATTACCGCTAAATTGATGGCCGATATGTTAACAACAGCCGGGTGTGATCATGTTATTACTATGGATTTGCATGCTTCCCAAATTCAAGGGTTCTTCGACGTCCCAGTAGATAATTTATATGCAGAACCAAGCGTAGTTAGGTATATCAAGGAAAATGTCAACTATATGGATTCAATAATAATTTCGCCAGATGCTGGTGGGGCAAAACGTGCTGCCACTTTGGCTGATCGTTTGGATCTAAATTTTGCATTGATCCATAAGGAAAGAGCTCGTGCCAATGAGGTTTCTCGTATGGTTCTTGTTGGGGATGTTACTGATAAGATTTGTATCATTGTTGATGATATGGCCGATACTTGTGGTACTTTAGCTAAGGCTGCTGAAATTCTTTTGGAGAATAGAGCTAAATCTGTTATTGCTATTGTCACGCACGGTGTTTTATCAGGCAGAGCTATTGAAAATATTAACAATTCTAAACTGGATAGAGTTGTTTGCACAAATACTGTTCCATTTGAAGAAAAAATCAAGAAGTGCCCAAAACTGGCAGTCATTGACATCAGTAGTGTGCTGGCTGAAAGTATTCGTCGTTTGCATAATGGTGAAAGTATTTCTTATTTATTTAAGAATTATCCCTTATAA","protein_sequence":"MPTNSIKLLAPDVHRGLAELVAKRLGLQLTSSKLKRDPTGEVSFSIGESVRDQDIFIITQIGSGVVNDRVLELLIMINASKTASARRITAIIPNFPYARQDRKDKSRAPITAKLMADMLTTAGCDHVITMDLHASQIQGFFDVPVDNLYAEPSVVRYIKENVNYMDSIIISPDAGGAKRAATLADRLDLNFALIHKERARANEVSRMVLVGDVTDKICIIVDDMADTCGTLAKAAEILLENRAKSVIAIVTHGVLSGRAIENINNSKLDRVVCTNTVPFEEKIKKCPKLAVIDISSVLAESIRRLHNGESISYLFKNYPL"},{"created_at":"2011-05-26T19:21:47.000Z","updated_at":"2011-05-29T05:06:25.000Z","name":"tRNA pseudouridine synthase 1","uniprot_id":"Q12211","uniprot_name":"PUS1_YEAST","enzyme":true,"transporter":false,"gene_name":"PUS1","num_residues":544,"molecular_weight":"62142.0","theoretical_pi":"8.37","general_function":"Involved in RNA binding","specific_function":"Formation of pseudouridine at positions 27 and 28 in the anticodon stem and loop of transfer RNAs; at positions 34 and 36 of intron-containing precursor tRNA(Ile) and at position 35 in the intron-containing tRNA(Tyr)","reactions":[{"id":2053,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2520,"direction":"\u003e","locations":"Cytoplasm;Nucleus. Mitochondrion;Nucleus","altext":"tRNA uridine = tRNA pseudouridine.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Nucleus","genbank_gene_id":"X80673","genbank_protein_id":"1403091","gene_card_id":"PUS1","chromosome_location":"chromosome 16","locus":"YPL212C","synonyms":["tRNA pseudouridylate synthase 1","tRNA-uridine isomerase 1"],"enzyme_classes":["5.4.99.-"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" RNA binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" binding"},{"category":"Function","description":" isomerase activity"},{"category":"Function","description":" intramolecular transferase activity"},{"category":"Function","description":" nucleic acid binding"},{"category":"Function","description":" pseudouridine synthase activity"},{"category":"Process","description":" RNA modification"},{"category":"Process","description":" pseudouridine synthesis"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" macromolecule metabolic process"},{"category":"Process","description":" cellular macromolecule metabolic process"},{"category":"Process","description":" RNA metabolic process"}],"pfams":[{"name":"PseudoU_synth_1","identifier":"PF01416"}],"pathways":[],"gene_sequence":"ATGTCTGAAGAGAATTTGAGGCCTGCCTATGACGATCAAGTTAATGAGGATGTCTACAAGAGAGGCGCTCAGAGCAAATTGACCAAAGCTCGTAAGGCAGACTTCGACGATGAAAAGGACAAAAAAAAGGATAATGACAAACACATAGATAAAAGACCAAAAAGCGGTCCTCGTTTGGATGAAAATGGCAATCCACTTCCCAAGGAGCCTCGTCTCCCAAAGAGAAAGGTGGCTGTTATGGTTGGTTACTGTGGTACTGGCTACCATGGTATGCAATATAATCCACCAAATCCAACCATCGAGTCTGCCCTATTCAAAGCATTTGTTGAAGCAGGTGCTATTTCCAAGGACAACTCCAACGATTTGAAAAAGAATGGATTCATGAGAGCTGCAAGAACTGATAAGGGTGTCCATGCTGGAGGTAATTTAATATCATTGAAAATGATTATTGAAGATCCTGATATCAAGCAGAAGATCAACGAAAAGTTACCGGAAGGGATAAGGGTATGGGATATCGAGCGTGTGAACAAGGCGTTTGATTGTAGAAAAATGTGCAGTTCACGTTGGTACGAATACTTATTACCAACTTATTCACTCATTGGCCCCAAACCTGGTTCTATACTTTATAGAGACATCGAAGAAAGTAAAACAGAATTACCTGGTGTATTAGATGAAGATTTGGAATCCAAAGAATTTTGGGAAGAGTTTAAAAAAGATGCGAATGAAAAATTTTCAACAGAAGAAATCGAAGCTATATTAGCATATGTTCCGCCCGCAAGAGATGAATTTGATATAAATGAAGAACTATACCAGAAGGTAAAAAAGTACAAGCAATTAGAAAATGCTCACCGTAGAAGATATCGTATATCCGCGGCAAAACTGGCCAAATTCCGTGCTTCTACAAGTCAATACCTTGGCGCTCATAACTTCCATAATTTTACATTAGGCAAGGACTTCAAAGAACCAAGTGCCATTCGATTTATGAAAGATATAAAAGTATCTGATCCATTTGTTATTGGCGATGCCCAAACAGAATGGATTTCCATCAAGATTCACGGCCAGTCTTTCATGCTACATCAAATTCGTAAGATGGTATCAATGGCAACCTTAATTACCCGTTGTGGTTGCCCCGTCGAACGCATTAGTCAGGCTTACGGACAGCAGAAGATTAATATTCCGAAGGCACCTGCATTAGGATTATTGTTAGAAGCTCCAGTATTTGAAGGTTATAATAAAAGACTAGAACAGTTTGGTTACAAGGCGATCGATTTTTCCAAATATCAAGACGAAGTGGATAAGTTCAAAATGAAGCATATCTACGATAAGATCTACAAGGAAGAGGTGGACGAAAATGTTTTTAATGCGTTCTTTAGTTATATTGATAGTTTCAACAAGGTTACTGGAGCACAGGGAGAAGAAACTGCCGATAAATCGGGACCTGCTGTGCAAAAGAGTATCTTCGAATTCTTGACAGCTAAGGGTATCCCAGGTCTTACTGATGCGCCCGAGAGCAATAAGAAGATTAAGCAAAGAAAAAGAATGGAAGAGGAGGAAGCTGCTAGTAAAAAGGCTGAAATATCCAGCACCACTCAGAGCAACGAACCTGAAGTACAACCGGAAGCGGCAGCTAATTAG","protein_sequence":"MSEENLRPAYDDQVNEDVYKRGAQSKLTKARKADFDDEKDKKKDNDKHIDKRPKSGPRLDENGNPLPKEPRLPKRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYLLPTYSLIGPKPGSILYRDIEESKTELPGVLDEDLESKEFWEEFKKDANEKFSTEEIEAILAYVPPARDEFDINEELYQKVKKYKQLENAHRRRYRISAAKLAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKINIPKAPALGLLLEAPVFEGYNKRLEQFGYKAIDFSKYQDEVDKFKMKHIYDKIYKEEVDENVFNAFFSYIDSFNKVTGAQGEETADKSGPAVQKSIFEFLTAKGIPGLTDAPESNKKIKQRKRMEEEEAASKKAEISSTTQSNEPEVQPEAAAN"},{"created_at":"2011-05-26T19:22:16.000Z","updated_at":"2011-05-27T15:01:06.000Z","name":"tRNA pseudouridine synthase 4","uniprot_id":"P48567","uniprot_name":"PUS4_YEAST","enzyme":true,"transporter":false,"gene_name":"PUS4","num_residues":403,"molecular_weight":"45273.10156","theoretical_pi":"6.54","general_function":"Involved in RNA processing","specific_function":"Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs","reactions":[{"id":2053,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2520,"direction":"\u003e","locations":"Cytoplasm;Nucleus. Mitochondrion;Nucleus","altext":"tRNA uridine = tRNA pseudouridine.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Nucleus. Mitochondrion","genbank_gene_id":"U23084","genbank_protein_id":"1050870","gene_card_id":"PUS4","chromosome_location":"chromosome 14","locus":"YNL292W","synonyms":["tRNA pseudouridine 55 synthase","Psi55 synthase","tRNA pseudouridylate synthase 4","tRNA-uridine isomerase 4"],"enzyme_classes":["5.4.99.-"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" RNA binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" binding"},{"category":"Function","description":" isomerase activity"},{"category":"Function","description":" intramolecular transferase activity"},{"category":"Function","description":" nucleic acid binding"},{"category":"Function","description":" pseudouridine synthase activity"},{"category":"Process","description":" RNA modification"},{"category":"Process","description":" pseudouridine synthesis"},{"category":"Process","description":" RNA processing"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" macromolecule metabolic process"},{"category":"Process","description":" cellular macromolecule metabolic process"},{"category":"Process","description":" RNA metabolic process"}],"pfams":[{"name":"TruB_N","identifier":"PF01509"}],"pathways":[],"gene_sequence":"ATGAATGGAATATTTGCTATTGAGAAGCCTAGCGGTATTACATCCAATCAGTTTATGCTAAAGTTGCAACATGCTTTAACTAAAAGTCAAGTATTCTCGAAGGAAATTCAAAGGGCAACAGCGGAAAGAAAGCAGCAATATGAAAAACAGACAGGTAAGAAGGCCAGCAAGAGGAAACTTCGTAAAGTCTCAAAGGTAAAGATGGGACACGGAGGCACTTTGGATCCGTTGGCCTCTGGTGTCCTGGTAATTGGGATTGGAGCGGGCACCAAAAAACTTGCAAATTATCTTTCAGGCACCGTTAAAGTCTATGAAAGTGAAGCCCTGTTTGGTGTTTCCACTACTTCAGGAGATGTAGAAGGTGAGATTTTGTCCCAGAACTCCGTTAAACATTTAAATTTCGATGATTTAAAGACTGTGGAGGAAAAATTTGTTGGACAATTAAAGCAGACGCCGCCAATATACGCAGCTTTGAAGATGGATGGCAAACCCCTGCATGAATATGCTCGAGAAGGAAAGCCTTTACCTAGAGCCATTGAGCCCAGACAAGTTACTATTTATGACTTGAAGGTGTTTTCAGACTCTCTTAAACGTGATCATGACTATCCCTTATTGAGGCCCACTACAGAAGAAGCTGTTGATACCGTGAAAAATTTGAATGCAAACATGCTAAACGATGTTTTATACTTTTCAAAAGAATATACAGAGAAGCACGGCCTTGATTCTGAGGTGGCAAAGGTAGAAGAACCATTTCCGCTGAGTGAACAAGAAGAGCAAGAAATCCAAAAAGAAGGAGATTCTTATAGGGCTCCAAAATTGCACTTCAAAGCTAATGTGTCTTCTGGAACATACATAAGGTCCTTAGTGAGCGACATCGGTAAATCTATGAGGAGCTCATGTTATATGGTGAAATTGATACGTTTGCAACAGCAGGACTGGTCTCTTGAAAAAAATAATGTGTTCCAATTAACGGATTTTACTGAAAGAGACGAGAAGGTGTGGAGTAAGGTACTGGAGAAGGTTCTAGACGAGGGAGCAACTGTTGATGTTATAGAAGAGCTAAAGAAAGCAGAAAAGGAAATACCAGCGGACGTGAAGGAATGTATAGTTTCGAGTGATCAACCTGGTGATGAGGCTACGGCTGAAACAATTGAAACTGCTAACGCCGAAGAACATTCTAATACACTAAAAAGAAAAATCGAACAGGTGTAA","protein_sequence":"MNGIFAIEKPSGITSNQFMLKLQHALTKSQVFSKEIQRATAERKQQYEKQTGKKASKRKLRKVSKVKMGHGGTLDPLASGVLVIGIGAGTKKLANYLSGTVKVYESEALFGVSTTSGDVEGEILSQNSVKHLNFDDLKTVEEKFVGQLKQTPPIYAALKMDGKPLHEYAREGKPLPRAIEPRQVTIYDLKVFSDSLKRDHDYPLLRPTTEEAVDTVKNLNANMLNDVLYFSKEYTEKHGLDSEVAKVEEPFPLSEQEEQEIQKEGDSYRAPKLHFKANVSSGTYIRSLVSDIGKSMRSSCYMVKLIRLQQQDWSLEKNNVFQLTDFTERDEKVWSKVLEKVLDEGATVDVIEELKKAEKEIPADVKECIVSSDQPGDEATAETIETANAEEHSNTLKRKIEQV"},{"created_at":"2011-05-26T19:23:54.000Z","updated_at":"2011-05-27T15:01:06.000Z","name":"tRNA pseudouridine synthase 2","uniprot_id":"P53167","uniprot_name":"PUS2_YEAST","enzyme":true,"transporter":false,"gene_name":"PUS2","num_residues":370,"molecular_weight":"41874.80078","theoretical_pi":"8.92","general_function":"Involved in RNA binding","specific_function":"Formation of pseudouridine in the anticodon stem and loop of transfer RNAs","reactions":[{"id":2053,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2520,"direction":"\u003e","locations":"Cytoplasm;Nucleus. Mitochondrion;Nucleus","altext":"tRNA uridine = tRNA pseudouridine.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Nucleus","genbank_gene_id":"X80674","genbank_protein_id":"1403093","gene_card_id":"PUS2","chromosome_location":"chromosome 7","locus":"YGL063W","synonyms":["tRNA pseudouridylate synthase 2","tRNA-uridine isomerase 2"],"enzyme_classes":["5.4.99.-"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" RNA binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" binding"},{"category":"Function","description":" isomerase activity"},{"category":"Function","description":" intramolecular transferase activity"},{"category":"Function","description":" nucleic acid binding"},{"category":"Function","description":" pseudouridine synthase activity"},{"category":"Process","description":" RNA modification"},{"category":"Process","description":" pseudouridine synthesis"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" macromolecule metabolic process"},{"category":"Process","description":" cellular macromolecule metabolic process"},{"category":"Process","description":" RNA metabolic process"}],"pfams":[{"name":"PseudoU_synth_1","identifier":"PF01416"}],"pathways":[],"gene_sequence":"ATGCTCTTAGGTTACTGTGGCAGCGGATACTATGGAATGCAATACAACCCACCACACAAGACGATTGAAGGTGAGATTCTCACCAAGCTCTTCGACGTAGGAGCCATTTCCGAAGAAAATTCATTGGCACCGAAGAAAAATTCCTTTATGGCAGCGGCAAGAACAGACAAGGGTGTACACGCTATGTTGAATCTACTGTCGCTAAAGATCACATTGCGAGAGGACACAGTAGCGAAGTTAAACGCCGCACTACCGCCCGAAATACGCGTGTGGGGTATCCAGCCTGTCAATAAAAAGTTTAATGCTAGATCCGCGTGCGATTCTCGATGGTACCAATACCTTATCCCAGAATTTATACTCATTGGTCCACCCCGGAGTTCTCTTTTGCATCGAAACGTGGGGGGATGCTACCGCGAAGACGGCTCGCAAGAGGTGTGGGATACGTTCCTGGAACAGACGCGTGGGAGATTTAGCGGGGATGAGCTGTGCCGTTTGCAGGACACTGCACAGAAACTAAGCGAGAGCGATCCTTTGGTACAAGACTACGTGGGGCTATTGAGCGGTACCCTTAGCGGCTACTGCTTGTCGCCCTCGAAGCTGGACGCGTTTGAGGCAGCCATGCAGGAGTACGTGGGAACGCATAATTTTCACAACTTTACCACAGGAAAGCTTTGGGGGGATCCTAGTGCTCAGCGCCATATCAAAAAGGTTGTAGTGTCGCAGGCCTCACCGGGATGGATATGTGTGCGGATCCACGGGCAGTCGTTTATGTTGCATCAGATTCGACGAATGGTAGCGCTTGCCGTACTTGCAGCCCGTTGCCAATTGCCGCCTAATATTGTACGTAACTATTTTAACGCCGGGCCTAGGAAATACATTCCGAGGGCGCCCGCACAAGGCCTATTATTAGAGGGACCTGTGTTTGACGGGTATAACACTAAGTTGCGCAATTTGCTGTATTGCGAAATCCGCCCGGACGATATCACTCTTGAGCGCATGTGCCGTTTCCGAGAACGCCAGATCTGTACTGCGATCGCACACGAGGAGACACAGCGTCACGTGTTTTGCCATTTTGTACGACAAATGAACCGCCTGGCCACGCCTCTAATCTAG","protein_sequence":"MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVHAMLNLLSLKITLREDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEFILIGPPRSSLLHRNVGGSYREDGSQEVWDTFLEQTRGRFSGDELCRLQDTAQKLSESDPLVQDYVGLLSGTLSGYCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIKKVVVSQASPGWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLEGPVFDGYNTKLRNLLYCEIRPDDITLERMCRFRERQICTAIAHEETQRHVFCHFVRQMNRLATPLI"},{"created_at":"2011-05-26T19:24:47.000Z","updated_at":"2011-05-26T19:24:47.000Z","name":"tRNA pseudouridine synthase 3","uniprot_id":"P31115","uniprot_name":"PUS3_YEAST","enzyme":true,"transporter":false,"gene_name":"PUS3","num_residues":442,"molecular_weight":"50888.30078","theoretical_pi":"9.75","general_function":"Involved in RNA binding","specific_function":"Formation of pseudouridines at positions 38 and 39 in the anticodon stem and loop of transfer RNAs","reactions":[{"id":2053,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2520,"direction":"\u003e","locations":"Cytoplasm;Nucleus. Mitochondrion;Nucleus","altext":"tRNA uridine = tRNA pseudouridine.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Nucleus","genbank_gene_id":"AY693197","genbank_protein_id":"51013845","gene_card_id":"PUS3","chromosome_location":null,"locus":null,"synonyms":["Depressed growth-rate protein DEG1","tRNA pseudouridylate synthase 3","tRNA-uridine isomerase 3"],"enzyme_classes":["5.4.99.-"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" RNA binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" binding"},{"category":"Function","description":" isomerase activity"},{"category":"Function","description":" intramolecular transferase activity"},{"category":"Function","description":" nucleic acid binding"},{"category":"Function","description":" pseudouridine synthase activity"},{"category":"Process","description":" RNA modification"},{"category":"Process","description":" pseudouridine synthesis"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" macromolecule metabolic process"},{"category":"Process","description":" cellular macromolecule metabolic process"},{"category":"Process","description":" RNA metabolic process"}],"pfams":[{"name":"PseudoU_synth_1","identifier":"PF01416"}],"pathways":[],"gene_sequence":"ATGAGTAATTTCATTAGAAGGCTAGTTGGGAAAATGAAAGCGATTTCAACAGGTACCAATGCTATTGTTAGTAAGAAGGACTCCATTTACGCAAACTGGTCCAAAGAGCAGCTAATACGAAGGATCACTGAACTAGAAAACGCAAATAAGCCACATTCTGAAAAATTCCAGCACATCGAGGATAACAAAAAGCGCAAAATTTCGCAAGAAGAGGTTACGAGAAGCAAGGCGAAAAAGGCTCCGAAGAAGTTTGACTTTTCTAAACATAATACCAGGTTCATCGCCTTGAGATTTGCCTATTTGGGATGGAATTACAATGGCTTAGCTGTTCAGAAGGAATACACACCGTTGCCTACAGTAGAGGGTACCATTTTGGAGGCCATGAATAAGTGTAAACTTGTTCCCTCGATGGTTTTACAAGACTATAAATTTAGCAGATGTGGCAGAACAGACAAGGGAGTTAGCGCCATGAACCAAGTTATATCGTTAGAAGTCCGTTCCAATTTAACAGATGAGGAACAGCGGGATCCGACCAACGACAGCAGGGAAATACCCTATGTTCACGTTTTAAATCAATTACTACCCGACGATATTCGTATATCAGCTGTCTGCCTCAGACCGCCACCTAACTTTGACGCAAGATTCAGCTGTGTTCACCGGCACTATAAGTACATCTTTAATGGAAAAAACCTTAATATTGAAAAAATGTCTAAAGCCGCATCATATTTTGTTGGAGAGAGAGACTTCAGGAATTTTTGTAAGCTTGATGGCTCAAAACAAATTACCAATTTTAAACGAACAATAATAAGCTCAAAAATTCTTCCCCTTTCTGAAACTTTCTATTGTTTTGATCTCGTTGGTTCAGCATTCCTATGGCACCAAGTTCGTTGCATGATGGCCATTCTTTTCTTAGTTGGTCAATCACTTGAAGTGCCGGAAATTGTCTTGCGTCTGACTGATATTGAGAAAACCCCTCAAAGGCCTGTTTACGAAATGGCAAATGATATACCATTATTGTTATATGATTGTAAATTTCCTGAAATGGATTGGCAAGAACCTACTGTAGATGACTATAAGGCAATAAAATTCACGACAGCTACTGAAGCATTGACGTTACACTACGAACTTAAGGCCGCAGTATGCAATATTTTTAAAGATGTTTTGCCCACAGCAAATACAAACAACTTCTCAAAGACAATTATTAATTTGGGCGATGGAAGAGGTAAAGTAGTCGGTACCTATGTGAAACTAGAGGATAGAAGCGTTATGGAACCTGTCGAAGTTGTTAATGCTAAATACTCCAAGAAAAAGAACAACAAAAATAAGTAA","protein_sequence":"MSNFIRRLVGKMKAISTGTNAIVSKKDSIYANWSKEQLIRRITELENANKPHSEKFQHIEDNKKRKISQEEVTRSKAKKAPKKFDFSKHNTRFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDLVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTATEALTLHYELKAAVCNIFKDVLPTANTNNFSKTIINLGDGRGKVVGTYVKLEDRSVMEPVEVVNAKYSKKKNNKNK"},{"created_at":"2011-05-26T19:34:05.000Z","updated_at":"2011-07-22T17:54:35.000Z","name":"Probable ribokinase","uniprot_id":"P25332","uniprot_name":"RBSK_YEAST","enzyme":true,"transporter":false,"gene_name":"RBK1","num_residues":333,"molecular_weight":"36923.80078","theoretical_pi":"4.93","general_function":"Involved in phosphotransferase activity, alcohol group as acceptor","specific_function":"ATP + D-ribose = ADP + D-ribose 5-phosphate","reactions":[{"id":1445,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1944,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2579,"direction":"\u003e","locations":"Cytoplasm. Nucleus","altext":"ATP + D-ribose = ADP + D-ribose 5-phosphate.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm. Nucleus","genbank_gene_id":"X56909","genbank_protein_id":"4492","gene_card_id":"RBK1","chromosome_location":"chromosome 3","locus":"YCR036W","synonyms":[],"enzyme_classes":["2.7.1.15"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" transferase activity, transferring phosphorus-containing groups"},{"category":"Function","description":" phosphotransferase activity, alcohol group as acceptor"},{"category":"Function","description":" ribokinase activity"},{"category":"Process","description":" D-ribose metabolic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" small molecule metabolic process"},{"category":"Process","description":" alcohol metabolic process"},{"category":"Process","description":" monosaccharide metabolic process"},{"category":"Process","description":" pentose metabolic process"}],"pfams":[{"name":"PfkB","identifier":"PF00294"}],"pathways":[{"name":"Pentose phosphate 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isomerase","uniprot_id":"Q12189","uniprot_name":"RPIA_YEAST","enzyme":true,"transporter":false,"gene_name":"RKI1","num_residues":258,"molecular_weight":"28257.80078","theoretical_pi":"5.72","general_function":"Involved in ribose-5-phosphate isomerase activity","specific_function":"D-ribose 5-phosphate = D-ribulose 5-phosphate","reactions":[{"id":1953,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2661,"direction":"\u003e","locations":null,"altext":"D-ribose 5-phosphate = D-ribulose 5-phosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":14083,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006508","source":"Smpdb"},{"id":14084,"direction":"\u003c\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R007093","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"X94335","genbank_protein_id":"1164942","gene_card_id":"RKI1","chromosome_location":"chromosome 15","locus":"YOR095C","synonyms":["D-ribose-5-phosphate ketol-isomerase","Phosphoriboisomerase"],"enzyme_classes":["5.3.1.6"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" isomerase activity"},{"category":"Function","description":" intramolecular oxidoreductase activity"},{"category":"Function","description":" intramolecular oxidoreductase activity, interconverting aldoses and ketoses"},{"category":"Function","description":" ribose-5-phosphate isomerase activity"},{"category":"Process","description":" pentose-phosphate shunt, non-oxidative branch"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" small molecule metabolic process"},{"category":"Process","description":" alcohol metabolic process"},{"category":"Process","description":" monosaccharide metabolic process"},{"category":"Process","description":" pentose metabolic process"}],"pfams":[{"name":"Rib_5-P_isom_A","identifier":"PF06026"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Riboneogenesis","kegg_map_id":null},{"name":"xylitol 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pyrophosphokinase 4","uniprot_id":"P38063","uniprot_name":"KPR4_YEAST","enzyme":true,"transporter":false,"gene_name":"PRS4","num_residues":327,"molecular_weight":"35845.69922","theoretical_pi":"6.35","general_function":"Involved in magnesium ion binding","specific_function":"5-phosphoribose 1-diphosphate synthase involved in nucleotide, histidine, and tryptophan biosynthesis. Active in heteromultimeric complexes with other 5-phosphoribose 1- diphosphate synthases (PRS2, PRS3, PRS4 and PRS5)","reactions":[{"id":1892,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2536,"direction":"\u003e","locations":"Cytoplasm","altext":"ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":4152,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006450","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm","genbank_gene_id":null,"genbank_protein_id":null,"gene_card_id":"PRS4","chromosome_location":"chromosome 2","locus":"YBL068W","synonyms":["Phosphoribosyl pyrophosphate synthase 4"],"enzyme_classes":["2.7.6.1"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" binding"},{"category":"Function","description":" ion binding"},{"category":"Function","description":" cation binding"},{"category":"Function","description":" metal ion binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" magnesium ion binding"},{"category":"Function","description":" transferase activity, transferring phosphorus-containing groups"},{"category":"Function","description":" diphosphotransferase activity"},{"category":"Function","description":" ribose phosphate diphosphokinase activity"},{"category":"Process","description":" biosynthetic process"},{"category":"Process","description":" nucleoside metabolic process"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" cellular biosynthetic process"},{"category":"Process","description":" nucleoside monophosphate metabolic process"},{"category":"Process","description":" nitrogen compound metabolic process"},{"category":"Process","description":" nucleoside monophosphate biosynthetic process"},{"category":"Process","description":" cellular nitrogen compound metabolic process"},{"category":"Process","description":" nucleotide biosynthetic process"},{"category":"Process","description":" nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"},{"category":"Process","description":" nucleobase, nucleoside and nucleotide metabolic process"},{"category":"Process","description":" nucleoside phosphate metabolic process"},{"category":"Process","description":" ribonucleoside monophosphate biosynthetic process"},{"category":"Process","description":" nucleotide metabolic process"}],"pfams":[{"name":"Pribosyltran","identifier":"PF00156"}],"pathways":[{"name":"Pentose phosphate pathway","kegg_map_id":"00030"},{"name":"Purine metabolism","kegg_map_id":"00230"},{"name":"Histidine Biosynthesis","kegg_map_id":null}],"gene_sequence":"ATGAATTCAGAGTCTCGAGAAGATATGGCTATAAATAGTATCAAATTGCTAGCGGGAAACTCCCATCCTGATTTGGCTGAACAAATATCGAAAAAGTTAGGTATTCCACTTTCCAAAGTTGGTGTGTACCAGTATTCTAATAAAGAAACCTCTGTCACCATAGGTGAGAGCCTTCGCGACGAAGATGTGTATATTATCCAAACTGGAATAGGTGAACAAGAAATTAATGATTTCTTGATGGAATTATTAATTTTAATTCATGCTTGCAAAATTGCATCTGCAAGAAAGATCACTACTGTAATACCCAATTTTCCATATGCAAGACAAGACAAGAAAGATAAATCCCGGGCGCCCATTACCGCAAAGTTGGTTGCCAATTTATTGCAAACTGCTGGTGCTGATCATGTCATCACAATGGATCTCCATGCCTCCCAAATTCAAGGGTTTTTCCATATCCCGGTTGACAACCTATATGCAGAACCAAGTGTTTTAAATTATATTAGAACGAAAACAGATTTCGACAATGCTATTTTGGTGTCGCCTGATGCAGGTGGTGCTAAGAGAGTAGCTGCTTTGGCTGACAAGTTAGATTTAAATTTTGCTTTGATTCACAAAGAGAGGCAAAAAGCTAACGAGGTTTCAAAAATGGTGCTTGTTGGTGATGTTACCAATAAATCATGTTTATTAGTTGATGATATGGCGGATACTTGTGGTACGTTGGTAAAAGCTTGTGATACGTTGATGGAGCATGGTGCCAAAGAAGTTATAGCTATTGTTACACACGGTATTTTCTCCGGTTCAGCAAGAGAAAAGCTAAGAAATAGTAGATTGTCTAGAATTGTTTGCACAAATACCGTTCCGGTAGATTTGGATTTACCTATTGCTGACCAGATCGATATTAGTCCCACGTTCGCTGAAGCTATAAGAAGACTACACAATGGTGAATCCGTGTCATATTTGTTCACCCATGCTCCAGTATAG","protein_sequence":"MNSESREDMAINSIKLLAGNSHPDLAEQISKKLGIPLSKVGVYQYSNKETSVTIGESLRDEDVYIIQTGIGEQEINDFLMELLILIHACQIASARKITTVIPNFPYARQDKKDKSRAPITAKLVANLLQTAGADHVITMDLHASQIQGFFHIPVDNLYAEPSVLNYIRARKTDFDNAILVSPDAGGAKRVAALADKLDLNFALIHKERQKANEVSKMVLVGDVTNKSCLLVDDMADTCGTLVKACDTLMEHGAKEVIAIVTHGIFSGSAREKLRNSRLSRIVCTNTVPVDLDLPIADQIDISPTFAEAIRRLHNGESVSYLFTHAPV"}]}