{"ymdb_id":"YMDB00593","created_at":"2011-05-29T18:33:58.000Z","updated_at":"2016-09-08T18:35:40.000Z","name":"(N(omega)-L-arginino)succinic acid","cas":"2387-71-5","state":"Solid","melting_point":null,"description":"Arginosuccinic acid is a basic amino acid. Some cells synthesize it from citrulline, aspartic acid and use it as a precursor for arginine in the urea cycle or citrulline-NO cycle.","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":"Cytoplasm","synthesis_reference":null,"chebi_id":"15682","hmdb_id":"HMDB00052","kegg_id":"C03406","pubchem_id":"16950","cs_id":"389016","foodb_id":null,"wikipedia_link":"Argininosuccinic acid","biocyc_id":null,"iupac":"2-{3-[(4S)-4-amino-4-carboxybutyl]carbamimidamido}butanedioic acid","traditional_iupac":"arginosuccinate","logp":"-5.797998694414509","pka":"3.234818865861278","alogps_solubility":"4.56e-01 g/l","alogps_logp":"-3.25","alogps_logs":"-2.80","acceptor_count":"10","donor_count":"7","rotatable_bond_count":"9","polar_surface_area":"185.83","refractivity":"75.3116","polarizability":"27.520676810856518","formal_charge":"0","physiological_charge":"-1","pka_strongest_basic":"12.386778740975123","pka_strongest_acidic":"2.1364394242772287","bioavailability":"1","number_of_rings":"0","rule_of_five":"0","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":["2-(N(omega)-L-arginine)succinate","2-(N(omega)-L-arginine)succinic acid","2-(N(omega)-L-arginino)succinate","2-(N(omega)-L-arginino)succinic acid","2-(Nomega-L-Arginino)succinate","2-(Nw-L-arginino)butanedioate","2-(Nw-L-arginino)butanedioic acid","Argininosuccinate","Argininosuccinic acid","Arginosuccinate","Arginosuccinic acid","ASA","l-argininosuccinate","l-argininosuccinic acid","L-Arginosuccinate","l-arginosuccinic acid","N-(((4-amino-4-carboxybutyl)amino)iminomethyl)-L-Aspartate","N-(L-arginino) succinate","N-(L-arginino) succinic acid","n-(l-arginino)succinate","N-(L-Arginino)succinic acid","N-[(4-amino-4-carboxybutyl)amidino]-L-Aspartate","N-[(4-amino-4-carboxybutyl)amidino]-L-Aspartic acid","N-[[(4-amino-4-carboxybutyl)amino]iminomethyl]-L-Aspartate","N(omega)-(L-arginino)succinate","N(omega)-(L-arginino)succinic acid"],"pathways":[{"name":"Alanine, aspartate and glutamate metabolism","kegg_map_id":"00250"},{"name":"Arginine and proline metabolism","kegg_map_id":"00330"}],"growth_conditions":[],"references":[{"pubmed_id":18846089,"citation":"Herrgard, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Bluthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novere, N., Li, P., Liebermeister, W., Mo, M. L., Oliveira, A. P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasic, I., Weichart, D., Brent, R., Broomhead, D. S., Westerhoff, H. V., Kirdar, B., Penttila, M., Klipp, E., Palsson, B. O., Sauer, U., Oliver, S. G., Mendes, P., Nielsen, J., Kell, D. B. (2008). \"A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.\" Nat Biotechnol 26:1155-1160."}],"proteins":[{"created_at":"2011-05-26T16:43:33.000Z","updated_at":"2011-07-22T17:54:12.000Z","name":"Argininosuccinate synthase","uniprot_id":"P22768","uniprot_name":"ASSY_YEAST","enzyme":true,"transporter":false,"gene_name":"ARG1","num_residues":420,"molecular_weight":"46939.30078","theoretical_pi":"5.4","general_function":"Involved in argininosuccinate synthase activity","specific_function":"In yeast, as can have a catabolic function since it allows efficient utilization of citrulline via arginine and the reactions involved in the arginase pathway","reactions":[{"id":1328,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2440,"direction":"\u003e","locations":null,"altext":"ATP + L-citrulline + L-aspartate = AMP + diphosphate + N(omega)-(L-arginino)succinate.","export":false,"pw_reaction_id":null,"source":null},{"id":3736,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006261","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"M35237","genbank_protein_id":"171085","gene_card_id":"ARG1","chromosome_location":"chromosome 15","locus":"YOL058W","synonyms":["Citrulline--aspartate ligase"],"enzyme_classes":["6.3.4.5"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" binding"},{"category":"Function","description":" nucleoside binding"},{"category":"Function","description":" purine nucleoside binding"},{"category":"Function","description":" adenyl nucleotide binding"},{"category":"Function","description":" adenyl ribonucleotide binding"},{"category":"Function","description":" ATP binding"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" argininosuccinate synthase activity"},{"category":"Function","description":" ligase activity"},{"category":"Function","description":" ligase activity, forming carbon-nitrogen bonds"},{"category":"Process","description":" cellular metabolic process"},{"category":"Process","description":" cellular amino acid and derivative metabolic process"},{"category":"Process","description":" cellular amino acid metabolic process"},{"category":"Process","description":" glutamine family amino acid metabolic process"},{"category":"Process","description":" arginine metabolic process"},{"category":"Process","description":" arginine biosynthetic process"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"Arginosuc_synth","identifier":"PF00764"}],"pathways":[{"name":"Alanine, aspartate and glutamate metabolism","kegg_map_id":"00250"},{"name":"Arginine and proline metabolism","kegg_map_id":"00330"}],"gene_sequence":"ATGTCTAAGGGAAAAGTTTGTTTGGCTTATTCTGGTGGTTTAGATACCTCCGTCATTTTGGCTTGGCTACTAGACCAGGCTACGGAAGTTGTAGCTTTCATGGCTAATGTAGGGCAAGAAGAAGATTTCGATGCCGCCAAGGTTTTGGCCTTGAAGATCGGTGCCTGCAAGTTCGTTTGTGGTGGATTGTCTGAAGATTTTGTCAAGGATATTCTATTCCCAGCTGTACAGGTCAACGCTGTGTACGAAGACGTTTATCTGTTGGGTACCTCTTTGGCAAGACCTGTTATTGCCAAAGCCCAAATTGACGTCGCTAAACAGGAGGGCTGTTTCGCGGTCTCTCATGGTTGTACCGGCAAAGGTAATGATCAAATCAGATTCGAATTGTCATTTTACGCTCTGAAGCCAGACGTTAAGTGTATTACACCATGGAGAATGCCTGAATTTTTCGAAAGATTTGCTGGCAGAAAGGATTTGTTAGACTATGCTGCACAAAAGGGTATTTTTGTCGCCCAAACCAAGGCCAAGCCATGGTCTACTGACGAAAACCAAGCCCACATTTCTTACGAGGCAGGTATCTTGGAAGACCCAGATACCACCCCACCAAAGGACATGTGGAAATTGATCGTCGATCCAATGGATGCTCCGGACCAACCACAAGATTTGACCATTGACTTTGAACGTGGTCTTCCAGTCAAGTTGACCTACACCGACAACAAGACTTCCAAGGAAGTTTCCGTTACCAAGCCTTTGGATGTTTTCTTGGCCGCATCCAACTTAGCAAGGGCCAACGGTGTTGGTAGAATCGATATTGTAGAAGATCGTTACATTAACTTGAAATCCAGAGGTTGTTACGAACAGGCTCCATTGACTGTTTTGAGAAAAGCTCATGTTGATTTGGAAGGTTTGACTTTAGACAAAGAAGTCCGTCAATTGAGAGACTCATTGGTCACTCCAAACTACTCCAGATTGATATATAACGGTTTCCTACTTCACCCAGAGTGTGAGTACATCAGATCTATGATCCAACCATCCCAAAATAGCGTTAACGGTACTGTCAGGGTTAGACTGTATAAGGGTAACGTCATCATTCTGGGCAGATCTACAAAGACTGAAAAGTTGTACGATCCGACAGAATCCTCTATGGATGAGTTGACCGGTTTCTTACCTACCGATACCACCGGTTTCATTGCCATCCAGGCCATTAGAATTAAAAAATACGGTGAATCCAAAAAAACCAAAGGTGAAGAGTTGACTTTGTAA","protein_sequence":"MSKGKVCLAYSGGLDTSVILAWLLDQGYEVVAFMANVGQEEDFDAAKEKALKIGACKFVCVDCREDFVKDILFPAVQVNAVYEDVYLLGTSLARPVIAKAQIDVAKQEGCFAVSHGCTGKGNDQIRFELSFYALKPDVKCITPWRMPEFFERFAGRKDLLDYAAQKGIPVAQTKAKPWSTDENQAHISYEAGILEDPDTTPPKDMWKLIVDPMDAPDQPQDLTIDFERGLPVKLTYTDNKTSKEVSVTKPLDVFLAASNLARANGVGRIDIVEDRYINLKSRGCYEQAPLTVLRKAHVDLEGLTLDKEVRQLRDSFVTPNYSRLIYNGFLLHPECEYIRSMIQPSQNSVNGTVRVRLYKGNVIILGRSTKTEKLYDPTESSMDELTGFLPTDTTGFIAIQAIRIKKYGESKKTKGEELTL"},{"created_at":"2011-05-26T16:44:03.000Z","updated_at":"2011-07-22T17:54:12.000Z","name":"Argininosuccinate lyase","uniprot_id":"P04076","uniprot_name":"ARLY_YEAST","enzyme":true,"transporter":false,"gene_name":"ARG4","num_residues":463,"molecular_weight":"51988.69922","theoretical_pi":"5.48","general_function":"Involved in argininosuccinate lyase activity","specific_function":"2-(N(omega)-L-arginino)succinate = fumarate + L-arginine","reactions":[{"id":1327,"direction":"\u003c\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2441,"direction":"\u003e","locations":null,"altext":"2-(N(omega)-L-arginino)succinate = fumarate + L-arginine.","export":false,"pw_reaction_id":null,"source":null},{"id":3738,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006263","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":null,"genbank_gene_id":"AY693155","genbank_protein_id":"51013761","gene_card_id":"ARG4","chromosome_location":"chromosome 8","locus":"YHR018C","synonyms":["ASAL","Arginosuccinase"],"enzyme_classes":["4.3.2.1"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" carbon-nitrogen lyase activity"},{"category":"Function","description":" amidine-lyase activity"},{"category":"Function","description":" argininosuccinate lyase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" lyase activity"},{"category":"Process","description":" cellular metabolic process"},{"category":"Process","description":" cellular amino acid and derivative metabolic process"},{"category":"Process","description":" cellular amino acid metabolic process"},{"category":"Process","description":" glutamine family amino acid metabolic process"},{"category":"Process","description":" arginine metabolic process"},{"category":"Process","description":" arginine biosynthetic process"},{"category":"Process","description":" arginine biosynthetic process via ornithine"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"Lyase_1","identifier":"PF00206"}],"pathways":[{"name":"Alanine, aspartate and glutamate metabolism","kegg_map_id":"00250"},{"name":"Arginine and proline 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