{"ymdb_id":"YMDB00564","created_at":"2011-05-29T18:31:35.000Z","updated_at":"2016-09-08T18:35:37.000Z","name":"Adenosine 2'-phosphate","cas":"130-49-4","state":"Solid","melting_point":null,"description":"Adenosine 2'-phosphate is converted enzymatically from adenosine 2',3'-cyclic phosphate via the enzyme 2',3'-cyclic-nucleotide 3'-phosphodiesterase [EC 3.1.4.37].","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":"cytoplasm","synthesis_reference":null,"chebi_id":"28223","hmdb_id":"HMDB11617","kegg_id":"C00946","pubchem_id":"94136","cs_id":"84953","foodb_id":null,"wikipedia_link":null,"biocyc_id":"CPD-3705","iupac":"{[(2R,3R,4R,5R)-2-(6-amino-9H-purin-9-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl]oxy}phosphonic acid","traditional_iupac":"adenosine 2'-phosphate","logp":"-4.813372996938782","pka":"5.815683881751798","alogps_solubility":"3.51e+00 g/l","alogps_logp":"-3.13","alogps_logs":"-2.00","acceptor_count":"10","donor_count":"5","rotatable_bond_count":"4","polar_surface_area":"186.06999999999996","refractivity":"74.06850000000001","polarizability":"29.583709389509554","formal_charge":"0","physiological_charge":"-2","pka_strongest_basic":"4.913987171046688","pka_strongest_acidic":"0.6902710437260553","bioavailability":"1","number_of_rings":"3","rule_of_five":"1","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":["2'-Adenylic acid","adenosine 2'-monophosphate","Adenosine 2'-phosphate","Adenosine-2'-monophosphate","AMP 2'-phosphate"],"pathways":[],"growth_conditions":[],"references":[{"pubmed_id":18846089,"citation":"Herrgard, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Bluthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novere, N., Li, P., Liebermeister, W., Mo, M. L., Oliveira, A. P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasic, I., Weichart, D., Brent, R., Broomhead, D. S., Westerhoff, H. V., Kirdar, B., Penttila, M., Klipp, E., Palsson, B. O., Sauer, U., Oliver, S. G., Mendes, P., Nielsen, J., Kell, D. B. (2008). \"A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.\" Nat Biotechnol 26:1155-1160."},{"pubmed_id":10734185,"citation":"Nasr, F., Filipowicz, W. (2000). \"Characterization of the Saccharomyces cerevisiae cyclic nucleotide phosphodiesterase involved in the metabolism of ADP-ribose 1\",2\"-cyclic phosphate.\" Nucleic Acids Res 28:1676-1683."}],"proteins":[{"created_at":"2011-05-27T07:43:59.000Z","updated_at":"2011-07-22T17:54:01.000Z","name":"2',3'-cyclic-nucleotide 3'-phosphodiesterase","uniprot_id":"P53314","uniprot_name":"CPD1_YEAST","enzyme":true,"transporter":false,"gene_name":"CPD1","num_residues":239,"molecular_weight":"26731.40039","theoretical_pi":"7.53","general_function":"Involved in cyclic-nucleotide phosphodiesterase activity","specific_function":"Involved in the metabolism of ADP-ribose 1',2'-cyclic phosphate which is produced as a consequence of tRNA splicing","reactions":[{"id":1283,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2815,"direction":"\u003e","locations":"Golgi apparatus","altext":"Nucleoside 2',3'-cyclic phosphate + H(2)O = nucleoside 2'-phosphate.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Golgi apparatus","genbank_gene_id":"AY558381","genbank_protein_id":"45270652","gene_card_id":"CPD1","chromosome_location":"chromosome 7","locus":"YGR247W","synonyms":["CPDase"],"enzyme_classes":["3.1.4.37"],"go_classes":[{"category":"Component","description":" cell part"},{"category":"Component","description":" intracellular"},{"category":"Function","description":" hydrolase activity"},{"category":"Function","description":" hydrolase activity, acting on ester bonds"},{"category":"Function","description":" phosphoric ester hydrolase activity"},{"category":"Function","description":" phosphoric diester hydrolase activity"},{"category":"Function","description":" cyclic-nucleotide phosphodiesterase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" metabolic process"},{"category":"Process","description":" macromolecule metabolic process"},{"category":"Process","description":" cellular macromolecule metabolic process"},{"category":"Process","description":" RNA metabolic process"}],"pfams":[{"name":"CPDase","identifier":"PF07823"}],"pathways":[],"gene_sequence":"ATGGCAATAGCATTATGGTATTGTCCACCACAAGGATCAGTTGCTTACGAGACATTACAGATGCTTATATTTTCGTTTCAAACGTTGTTCCCAGATTCACCAGTTTTTGAACCTCATGTGACGGTAACGTCCCATTTGGTGTGCAATAGTAAAGATGATGTCAACAAAATCTTGACCTCCTGTGTTGCTGCCATCCAATCGATAAGGTCACACCAAACAGCAAAGAAAGGACGTAAGGGACAGGTATCCCATGCTGTTGCAGCTCCTTTGGTATCTTTCAATGGATGCAGTGTAGGTAAACAATATTTCAAGAAAATTGTGCTCGAGTGTAACAAGAACAAAATACTTTATGGGGTCGCACAAGTCATGAGAGAGATGTACGTAGAGATCGATCCTGAGACGCGAAGTAGCCGTGCCGCCACTTGGGTGCACGAGGAATTCCATCCTCACGTCTCATTGCTTTATTCGGATATTCATCCGGTAAGTCAGGCGTCATTGCGAGTAGTTCAACAAAGAATTGAAGATGCTCTAGACGTGCAACTAGTTCCAAGAGAGAAACGTAAGGGTTCCGGAAACGCTGATGGGTCCAATGAAGTGCAAATGAGATGGGATTTTGACGTATCTTCATCGCTATCTTGGAATATCCCAGGAACGTTTAAAGTGGTCAACTGTGTGGGGCCCGTTCAAGAATGGGAGGTATTGGGACGGGTGGACGTTTAA","protein_sequence":"MAIALWYCPPQGSVAYETLQMLIFSFQTLFPDSPVFEPHVTVTSHLVCNSKDDVNKILTSCVAAIQSIRSHQTAKKGRKGQVSHAVAAPLVSFNGCSVGKQYFKKIVLECNKNKILYGVAQVMREMYVEIDPETRSSRAATWVHEEFHPHVSLLYSDIHPVSQASLRVVQQRIEDALDVQLVPREKRKGSGNADGSNEVQMRWDFDVSSSLSWNIPGTFKVVNCVGPVQEWEVLGRVDV"}]}