{"ymdb_id":"YMDB00342","created_at":"2011-05-29T18:07:54.000Z","updated_at":"2016-09-08T18:35:22.000Z","name":"2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol ","cas":null,"state":"Solid","melting_point":"","description":"2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) is an intermediate in coenzyme Q biosynthesis.","experimental_water_solubility":"","experimental_logp_hydrophobicity":"","location":null,"synthesis_reference":null,"chebi_id":null,"hmdb_id":"HMDB11661","kegg_id":null,"pubchem_id":"1154","cs_id":null,"foodb_id":null,"wikipedia_link":null,"biocyc_id":"CPD-9871","iupac":"3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-methoxy-2-methylcyclohexa-2,5-diene-1,4-diol","traditional_iupac":"3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-methoxy-2-methylcyclohexa-2,5-diene-1,4-diol","logp":"9.236181481333332","pka":"14.200370025889306","alogps_solubility":"5.58e-04 g/l","alogps_logp":"7.59","alogps_logs":"-6.01","acceptor_count":"3","donor_count":"2","rotatable_bond_count":"18","polar_surface_area":"49.69","refractivity":"185.98430000000002","polarizability":"72.38073419828787","formal_charge":"0","physiological_charge":"0","pka_strongest_basic":"-3.1901149722334035","pka_strongest_acidic":"13.242070289981047","bioavailability":"0","number_of_rings":"1","rule_of_five":"0","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":["2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol","5-Demethoxyubiquinol","DMQH2"],"pathways":[],"growth_conditions":[],"references":[{"pubmed_id":21051339,"citation":"UniProt Consortium (2011). \"Ongoing and future developments at the Universal Protein Resource.\" Nucleic Acids Res 39:D214-D219."}],"proteins":[{"created_at":"2011-05-27T03:11:11.000Z","updated_at":"2011-05-29T05:06:37.000Z","name":"Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial","uniprot_id":"P49017","uniprot_name":"COQ5_YEAST","enzyme":true,"transporter":false,"gene_name":"COQ5","num_residues":307,"molecular_weight":"34684.19922","theoretical_pi":"6.52","general_function":"Involved in methyltransferase activity","specific_function":"Converts DDMQH2 into DMQH2","reactions":[{"id":2709,"direction":"\u003e","locations":"Mitochondrion","altext":"S-adenosyl-L-methionine + 2-polyprenyl-6-methoxy-1,4-benzoquinol = S-adenosyl-L-homocysteine + 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Mitochondrion","genbank_gene_id":"AY693194","genbank_protein_id":"51013839","gene_card_id":"COQ5","chromosome_location":"chromosome 13","locus":"YML110C","synonyms":[],"enzyme_classes":["2.1.1.-"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" transferase activity"},{"category":"Function","description":" transferase activity, transferring one-carbon groups"},{"category":"Function","description":" methyltransferase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" Not Available"}],"pfams":[{"name":"Ubie_methyltran","identifier":"PF01209"}],"pathways":[],"gene_sequence":"ATGTTGATTTCTTCACGGATCGTTCGAAGCTCGCTGGTAAATGTCCCGCTAAGATTATCTAGGTGTTTTACGCAAGCTCACAGAGCATGCAAAGAAGAAGAAGTTAATAGTCCTTTATCATCCGCAGCTGAACAGCCAGAGCAGAAGTATACGCATTTTGGTTCGAAGACTGTATTGAAGTCTACCAAGCAGAAGTTAGTTGGTGATGTCTTTTCTTCCGTGGCCAATCGGTATGACTTGATGAATGATGTTATGTCATTAGGAATTCATAGATTGTGGAAGGACCATTTTATCAATAAACTAGATGCGGGAAAAAGGCCAAACTCTACGACTCCTTTGAACTTCATAGATGTGGCTGGGGGATCCGGTGATATTGCTTTCGGATTACTAGACCATGCTGAGTCGAAATTTGGTGACACTGAGTCTACAATGGATATTGTAGATATCAACCCTGACATGCTTAAAGAAGGTGAGAAGAGAGCCATGGAGCAAGGAAAATATTTCAAGGATCCTCGTGTGAGATTTTTGGTTTCTAATGGTGAGAAACTAGAGGAGATTGATTCTGATTCCAAGGACATCTACACAGTCTCCTTCGGTATCAGAAATTTCACCGATATTCAAAAGGGTTTAAACACTGCTTATAGAGTTTTGAAACCGGGCGGTATTTTTTATTGTCTAGAATTTTCCAAAATTGAGAATCCCCTAATGGACTTTGCTTACCAACAGTGGGCTAAGGTCCTACCTGTAATGGGCTCGATGATTGCTAATGACTACGACTCTTACCAGTATTTGGTGGAGTCTATCGAAAGATTTCCTGACCAAGAAACGTTCAAATCCATGATTGAGAAGGCAGGATTCAAATCTGCTGGCTACGAAAGTTTAACTTTTGGTATATGTGCCATCCATTGGGGCATTAAAGTTTAA","protein_sequence":"MLISSRIVRSSLVNVPLRLSRCFTQAHRACKEEEVNSPLSSAAEQPEQKYTHFGSKTVLKSTKQKLVGDVFSSVANRYDLMNDVMSLGIHRLWKDHFINKLDAGKRPNSTTPLNFIDVAGGSGDIAFGLLDHAESKFGDTESTMDIVDINPDMLKEGEKRAMEQGKYFKDPRVRFLVSNGEKLEEIDSDSKDIYTVSFGIRNFTDIQKGLNTAYRVLKPGGIFYCLEFSKIENPLMDFAYQQWAKVLPVMGSMIANDYDSYQYLVESIERFPDQETFKSMIEKAGFKSAGYESLTFGICAIHWGIKV"}]}