Ubiquinone Biosynthesis

Source	ID	Pathway
PathWhiz	PW002473

Pathway Metabolites

YMDB ID	Name CAS Number	IUPAC Name	Formula Weight	Structure
YMDB00174	2-Hexaprenyl-6-methoxy-1,4-benzoquinone	2-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-6-methoxycyclohexa-2,5-diene-1,4-dione	C37H54O3 546.8229
YMDB00194	Iron(3+) 20074-52-6	iron(3+) ion	Fe 55.845
YMDB00198	S-Adenosylhomocysteine 979-92-0	(2S)-2-amino-4-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}sulfanyl)butanoic acid	C14H20N6O5S 384.411
YMDB00219	Pyrophosphate 14000-31-8	(phosphonooxy)phosphonic acid	H4O7P2 177.9751
YMDB00297	S-Adenosylmethionine 29908-03-0	[(3S)-3-amino-3-carboxypropyl]({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl})methylsulfanium	C15H23N6O5S 399.445
YMDB00426	NADPH 53-57-6	{[(2R,3R,4R,5R)-2-(6-amino-9H-purin-9-yl)-5-[({[({[(2R,3S,4R,5R)-5-(3-carbamoyl-1,4-dihydropyridin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-4-hydroxyoxolan-3-yl]oxy}phosphonic acid	C21H30N7O17P3 745.4209
YMDB00427	NADP 53-59-8	1-[(2R,3R,4S,5R)-5-[({[({[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-3,4-dihydroxyoxolan-2-yl]-3-carbamoyl-1lambda5-pyridin-1-ylium	C21H29N7O17P3 744.4129
YMDB00437	2-hexaprenyl-6-methoxy-3-methyl-1,4-benzoquinone	3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-methoxy-2-methylcyclohexa-2,5-diene-1,4-dione	C38H56O3 560.8494
YMDB00438	S-Adenosyl-L-methionine 29908-03-0	[(3S)-3-amino-3-carboxypropyl]({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl})methylsulfanium	C15H23N6O5S 399.445
YMDB00440	2-hexaprenyl-6-methoxyphenol	2-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-6-methoxyphenol	C37H56O2 532.8393
YMDB00459	3-Hexaprenyl-4-hydroxybenzoic acid 65848-03-5	3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-4-hydroxybenzoic acid	C37H54O3 546.8229
YMDB00460	3-Hexaprenyl-4,5-dihydroxybenzoic acid 63975-40-6	3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-4,5-dihydroxybenzoic acid	C37H54O4 562.8223
YMDB00461	3-Hexaprenyl-4-hydroxy-5-methoxybenzoic acid 66551-60-8	3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-4-hydroxy-5-methoxybenzoic acid	C38H56O4 576.8488
YMDB00495	4-Hydroxybenzoic acid 99-96-7	4-hydroxybenzoic acid	C7H6O3 138.1207
YMDB00633	hexaprenyl diphosphate	[({[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C30H52O7P2 586.6772
YMDB00660	Ubiquinone-6 1065-31-2	2-(3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl)-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione	C39H58O4 590.8754
YMDB00701	2-hexaprenyl-5-hydroxy-6-methoxy-3-methyl-1,4-benzoquinone	2-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-hydroxy-6-methoxy-3-methylcyclohexa-2,5-diene-1,4-dione	C38H56O4 576.8488
YMDB00839	all-trans-Hexaprenyl diphosphate	[({[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C30H52O7P2 586.6772
YMDB00862	hydron 12408-02-5	hydron	H 1.00794
YMDB00890	water 7732-18-5	water	H2O 18.0153
YMDB00900	oxygen 7782-44-7	dioxygen	O2 31.9988
YMDB01493	Ubiquinone 6 1065-31-2	2-(3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl)-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione	C39H58O4 590.8754
YMDB16190	2-Hexaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinone	4-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-hydroxy-6-methoxy-3-methylcyclohexa-3,5-diene-1,2-dione	C38H56O4 576.8488

Pathway Proteins