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Selenocompound metabolism

SourceIDPathway
PathWhizPW002472 ThumbThumb?image type=greyscaleThumb?image type=simple
KEGG00450 Map00450

Pathway Metabolites

YMDB ID Name
CAS Number
IUPAC Name Formula
Weight
Structure
YMDB00033Glyoxylic acid
298-12-4
2-oxoacetic acidC2H2O3
74.0355
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YMDB00056Acetic acid
64-19-7
acetic acidC2H4O2
60.052
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YMDB000712-Ketobutyric acid
600-18-0
2-oxobutanoic acidC4H6O3
102.0886
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YMDB00081Tetrahydropteroyltri-L-glutamate(2S)-2-[(4S)-4-[(4S)-4-{[4-({[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]formamido}-4-carboxybutanamido]-4-carboxybutanamido]pentanedioic acidC29H37N9O12
703.6572
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YMDB00091Ammonia
7664-41-7
ammoniaH3N
17.0305
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YMDB00097Adenosine monophosphate
61-19-8
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acidC10H14N5O7P
347.2212
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YMDB00109Adenosine triphosphate
56-65-5
({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acidC10H16N5O13P3
507.181
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YMDB00154L-Alanine
56-41-7
(2S)-2-aminopropanoic acidC3H7NO2
89.0932
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YMDB00175Pyruvic acid
127-17-3
2-oxopropanoic acidC3H4O3
88.0621
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YMDB00219Pyrophosphate
14000-31-8
(phosphonooxy)phosphonic acidH4O7P2
177.9751
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YMDB003285-Methyltetrahydropteroyltri-L-glutamateC30H39N9O12
717.6838
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YMDB00338Succinic acid
110-15-6
butanedioic acidC4H6O4
118.088
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YMDB00426NADPH
53-57-6
{[(2R,3R,4R,5R)-2-(6-amino-9H-purin-9-yl)-5-[({[({[(2R,3S,4R,5R)-5-(3-carbamoyl-1,4-dihydropyridin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-4-hydroxyoxolan-3-yl]oxy}phosphonic acidC21H30N7O17P3
745.4209
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YMDB00427NADP
53-59-8
1-[(2R,3R,4S,5R)-5-[({[({[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-3,4-dihydroxyoxolan-2-yl]-3-carbamoyl-1lambda5-pyridin-1-yliumC21H29N7O17P3
744.4129
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YMDB005185-Methyltetrahydropteroyltri-L-glutamic acid(2S)-2-[(4S)-4-[(4S)-4-{[4-({[(6S)-2-amino-5-methyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]formamido}-4-carboxybutanamido]-4-carboxybutanamido]pentanedioic acidC30H39N9O12
717.6838
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YMDB00862hydron
12408-02-5
hydronH
1.00794
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YMDB00890water
7732-18-5
waterH2O
18.0153
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YMDB00917O-Succinyl-L-homoserine
1492-23-5
(2S)-2-amino-4-[(3-carboxypropanoyl)oxy]butanoic acidC8H13NO6
219.1919
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YMDB16154Selenocysteine(2R)-2-amino-3-selanylpropanoic acidC3H7NO2Se
168.05
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YMDB16175Selenomethionine2-amino-4-(methylselanyl)butanoic acidC5H11NO2Se
196.11
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YMDB16177Se-Methylselenocysteine(2R)-2-amino-3-(methylselanyl)propanoic acidC4H9NO2Se
182.08
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YMDB16178Selenohomocysteine2-amino-4-selanylbutanoic acidC4H9NO2Se
182.08
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YMDB16184Selenocystathionine2-amino-4-[(2-amino-2-carboxyethyl)selanyl]butanoic acidC7H14N2O4Se
269.16
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YMDB16245Acetylhomoserine4-(acetyloxy)-2-aminobutanoic acidC6H11NO4
161.1558
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YMDB16312methylselenolmethaneselenolCH4Se
95.0
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YMDB16313Methylselenic acidmethaneseleninic acidCH4O2Se
127.0
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Pathway Proteins

Uniprot ID Gene Name
Locus
Name Type Metabolites
P08536MET3
YJR010W
Sulfate adenylyltransferaseEnzyme
P53206
YGR012W
Putative cysteine synthaseEnzyme
Q04533
YML082W
Putative cystathionine gamma-synthase YML082WEnzyme
P31373CYS3
YAL012W
Cystathionine gamma-lyaseEnzyme
Q12198
YLL058W
Putative cystathionine gamma-synthase YLL058WEnzyme
P47164STR2
YJR130C
Cystathionine gamma-synthaseEnzyme
P39954SAH1
YER043C
AdenosylhomocysteinaseEnzyme
P05694MET6
YER091C
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferaseEnzyme
P53101STR3
YGL184C
Cystathionine beta-lyaseEnzyme
P43623IRC7
YFR055W
Putative cystathionine beta-lyaseEnzyme
P22438MSM1
YGR171C
Methionyl-tRNA synthetase, mitochondrialEnzyme
P00958MES1
YGR264C
Methionyl-tRNA synthetase, cytoplasmicEnzyme
P10659SAM1
YLR180W
S-adenosylmethionine synthase 1Enzyme
Q02196MET14
YKL001C
Adenylyl-sulfate kinaseEnzyme
P32582CYS4
YGR155W
Cystathionine beta-synthaseEnzyme
Q05902ECM38
YLR299W
Gamma-glutamyltransferaseEnzyme
P29509TRR1
YDR353W
Thioredoxin reductase 1Enzyme
P38816TRR2
YHR106W
Thioredoxin reductase 2, mitochondrialEnzyme
P19358SAM2
YDR502C
S-adenosylmethionine synthase 2Enzyme