Pentose and glucuronate interconversions

Source	ID	Pathway
KEGG	00040

Pathway Metabolites

YMDB ID	Name CAS Number	IUPAC Name	Formula Weight
YMDB00115	D-Glyceraldehyde 3-phosphate 142-10-9	(2-hydroxy-3-oxopropoxy)phosphonic acid	C₃H₇O₆P 170.0578
YMDB00153	Oxoglutaric acid 328-50-7	2-oxopentanedioic acid	C₅H₆O₅ 146.0981
YMDB00161	D-Xylulose 551-84-8	(3S,4R)-1,3,4,5-tetrahydroxypentan-2-one	C₅H₁₀O₅ 150.1299
YMDB00175	Pyruvic acid 127-17-3	2-oxopropanoic acid	C₃H₄O₃ 88.0621
YMDB00212	Uridine diphosphate glucose 133-89-1	[({[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid	C₁₅H₂₄N₂O₁₇P₂ 566.3018
YMDB00288	Glucose 1-phosphate 59-56-3	{[(3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phosphonic acid	C₆H₁₃O₉P 260.1358
YMDB00322	Dihydroxyacetone phosphate 57-04-5	(3-hydroxy-2-oxopropoxy)phosphonic acid	C₃H₇O₆P 170.0578
YMDB00343	Glycolaldehyde 141-46-8	2-hydroxyacetaldehyde	C₂H₄O₂ 60.052
YMDB00362	Xylulose 5-phosphate 4212-65-1	{[(2R,3S)-2,3,5-trihydroxy-4-oxopentyl]oxy}phosphonic acid	C₅H₁₁O₈P 230.1098
YMDB00373	D-Xylitol 87-99-0		C₅H₁₂O₅ 152.1458
YMDB00383	Gluconic acid 526-95-4	(2R,3S,4R,5R)-2,3,4,5,6-pentahydroxyhexanoic acid	C₆H₁₂O₇ 196.1553
YMDB00415	UDP-D-glucose 133-89-1	[({[(2R,3S,4R,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphinic acid	C₁₅H₂₄N₂O₁₇P₂ 566.3018
YMDB00591	L-arabinitol 7643-75-6	(2S,4S)-pentane-1,2,3,4,5-pentol	C₅H₁₂O₅ 152.1458
YMDB00674	aldehydo-D-galacturonate 685-73-4	(2S,3R,4S,5R)-2,3,4,5-tetrahydroxy-6-oxohexanoic acid	C₆H₁₀O₇ 194.1394
YMDB00778	Xylitol 87-99-0	(2R,4S)-pentane-1,2,3,4,5-pentol	C₅H₁₂O₅ 152.1458
YMDB00779	aldehydo-D-Xylose 58-86-6	(3R,4S,5R)-oxane-2,3,4,5-tetrol	C₅H₁₀O₅ 150.1299
YMDB00827	D-gluconate 59625-89-7		C₆H₁₁O₇ 195.1473
YMDB00867	CDP-ribitol 3506-17-0	{[(2R,3S,4R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[hydroxy({[(2R,3S,4S)-2,3,4,5-tetrahydroxypentyl]oxy})phosphoryl]oxy})phosphinic acid	C₁₄H₂₅N₃O₁₅P₂ 537.3069
YMDB00893	L-Arabinose 5328-37-0	(3R,4S,5S)-oxane-2,3,4,5-tetrol	C₅H₁₀O₅ 150.1299
YMDB00904	Pectin 9000-69-5	(2S,3R,4S,5R,6R)-3,4,5,6-tetrahydroxyoxane-2-carboxylic acid	C₆H₁₀O₇ 194.1394
YMDB00948	D-ribulose 5-phosphate 4151-19-3	{[(2R,3R)-2,3,5-trihydroxy-4-oxopentyl]oxy}phosphonic acid	C₅H₁₁O₈P 230.1098
YMDB00970	alpha-D-glucose 1-phosphate 59-56-3	{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phosphonic acid	C₆H₁₃O₉P 260.1358
YMDB00975	gluconate 526-95-4		C₆H₁₂O₇ 196.1553
YMDB01053	pyruvate 127-17-3		C₃H₃O₃ 87.0541

Pathway Proteins

Uniprot ID	Gene Name Locus	Name	Type	Metabolites
P42826	XKS1 YGR194C	Xylulose kinase	Enzyme	Adenosine triphosphate D-Xylulose Xylulose 5-phosphate hydron ADP
Q07993	XYL2 YLR070C	D-xylulose reductase	Enzyme	NAD NADH D-Xylulose D-Xylitol NAD(+) Xylitol hydron
P38715	GRE3 YHR104W	NADPH-dependent aldose reductase GRE3	Enzyme	D-Lactaldehyde Lactaldehyde Pyruvaldehyde Glycerol D-Glucose D-Xylitol NADPH NADP D-glyceraldehyde L-arabinitol D-glucitol Xylitol aldehydo-D-Xylose hydron L-Arabinose
P38709	YHL012W	Probable UTP--glucose-1-phosphate uridylyltransferase	Enzyme	Uridine diphosphate glucose Pyrophosphate Glucose 1-phosphate Uridine triphosphate UDP-D-glucose alpha-D-glucose 1-phosphate
P32861	UGP1 YKL035W	UTP--glucose-1-phosphate uridylyltransferase	Enzyme	Uridine diphosphate glucose Pyrophosphate Glucose 1-phosphate Uridine 5'-diphosphate Uridine triphosphate UDP-D-glucose hydron alpha-D-glucose 1-phosphate
P46969	RPE1 YJL121C	Ribulose-phosphate 3-epimerase	Enzyme	Xylulose 5-phosphate D-ribulose 5-phosphate
P47180	PGU1 YJR153W	Polygalacturonase	Enzyme	aldehydo-D-galacturonate water Pectin