You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on Yeast Metabolome Database.

Arginine and proline metabolism

SourceIDPathway
KEGG00330 Map00330

Pathway Metabolites

YMDB ID Name
CAS Number
IUPAC Name Formula
Weight
Structure
YMDB00002L-Glutamine
56-85-9
(2S)-2-amino-4-carbamoylbutanoic acidC5H10N2O3
146.1445
Thumb
YMDB00003Urea
57-13-6
ureaCH4N2O
60.0553
Thumb
YMDB00028N-Acetylornithine
6205-08-9
(2S)-5-amino-2-acetamidopentanoic acidC7H14N2O3
174.1977
Thumb
YMDB00033Glyoxylic acid
298-12-4
2-oxoacetic acidC2H2O3
74.0355
Thumb
YMDB00034L-aspartic 4-semialdehyde
15106-57-7
(2S)-2-amino-4-oxobutanoic acidC4H7NO3
117.1033
Thumb
YMDB000421,3-Diaminopropane
109-76-2
propane-1,3-diamineC3H10N2
74.1249
Thumb
YMDB00047N-Acetyl-L-glutamyl 5-phosphate
15383-57-0
(2S)-2-acetamido-5-oxo-5-(phosphonooxy)pentanoic acidC7H12NO8P
269.1458
Thumb
YMDB00052Argininosuccinic acid
2387-71-5
(2S)-2-{N'-[(4S)-4-amino-4-carboxybutyl]carbamimidamido}butanedioic acidC10H18N4O6
290.2731
Thumb
YMDB00060Citrulline
372-75-8
(2S)-2-amino-5-(carbamoylamino)pentanoic acidC6H13N3O3
175.1857
Thumb
YMDB00066N-acetyl-L-glutamic acid
1188-37-0
(2S)-2-acetamidopentanedioic acidC7H11NO5
189.1659
Thumb
YMDB00082Carbamoylphosphate
590-55-6
(carbamoyloxy)phosphonic acidCH4NO5P
141.0199
Thumb
YMDB00091Ammonia
7664-41-7
ammoniaH3N
17.0305
Thumb
YMDB00101Fumaric acid
110-17-8
(2E)-but-2-enedioic acidC4H4O4
116.0722
Thumb
YMDB00124urea-1-carboxylic acid
625-78-5
carbamoylcarbamic acidC2H4N2O3
104.0648
Thumb
YMDB00130S-Adenosylmethioninamine
22365-13-5
{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(3-aminopropyl)methylsulfaniumC14H23N6O3S
355.436
Thumb
YMDB00132Putrescine
110-60-1
butane-1,4-diamineC4H12N2
88.1515
Thumb
YMDB00175Pyruvic acid
127-17-3
2-oxopropanoic acidC3H4O3
88.0621
Thumb
YMDB002094-acetamidobutanalN-(4-oxobutyl)acetamideC6H11NO2
129.157
Thumb
YMDB00231Spermine
71-44-3
(3-aminopropyl)({4-[(3-aminopropyl)amino]butyl})amineC10H26N4
202.3402
Thumb
YMDB00232Spermidine
124-20-9
(4-aminobutyl)(3-aminopropyl)amineC7H19N3
145.2459
Thumb
YMDB00233L-Glutamic acid 5-phosphate
13254-53-0
(2S)-2-amino-5-oxo-5-(phosphonooxy)pentanoic acidC5H10NO7P
227.1092
Thumb
YMDB002431-Pyrroline-5-carboxylic acid
2906-39-0
3,4-dihydro-2H-pyrrole-2-carboxylic acidC5H7NO2
113.1146
Thumb
YMDB00255N-Acetyl-L-glutamate 5-semialdehyde
13074-21-0
(2S)-2-acetamido-5-oxopentanoic acidC7H11NO4
173.1665
Thumb
YMDB00271L-Glutamic acid
56-86-0
(2S)-2-aminopentanedioic acidC5H9NO4
147.1293
Thumb
YMDB00297S-Adenosylmethionine
29908-03-0
[(3S)-3-amino-3-carboxypropyl]({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl})methylsulfaniumC15H23N6O5S
399.445
Thumb
YMDB00335gamma-Aminobutyric acid
56-12-2
4-aminobutanoic acidC4H9NO2
103.1198
Thumb
YMDB00378L-Proline
147-85-3
(2S)-pyrrolidine-2-carboxylic acidC5H9NO2
115.1305
Thumb
YMDB004191-Pyrroline-5-carboxylateC5H6NO2
112.1066
Thumb
YMDB00438S-Adenosyl-L-methionine
29908-03-0
[(3S)-3-amino-3-carboxypropyl]({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl})methylsulfaniumC15H23N6O5S
399.445
Thumb
YMDB004894-Acetamidobutanoic acid
3025-96-5
4-acetamidobutanoic acidC6H11NO3
145.1564
Thumb
YMDB004974-Coumaroyl-CoA
119785-99-8
{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-3-({2-[(2-{[3-(4-hydroxyphenyl)prop-2-enoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)-2,2-dimethylpropoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acidC30H42N7O18P3S
913.677
Thumb
YMDB005362-Acetamido-5-oxopentanoic acid(2S)-2-acetamido-5-oxopentanoic acidC7H11NO4
173.1665
Thumb
YMDB005854-guanidinobutanoic acid
463-00-3
4-[(diaminomethylidene)amino]butanoic acidC5H11N3O2
145.1597
Thumb
YMDB005864-guanidinobutanamide4-carbamimidamidobutanamideC5H12N4O
144.175
Thumb
YMDB005874-aminobutanal
4390-05-0
4-aminobutanalC4H9NO
87.1204
Thumb
YMDB00592L-Arginine
74-79-3
(2S)-2-amino-5-carbamimidamidopentanoic acidC6H14N4O2
174.201
Thumb
YMDB00593(N(omega)-L-arginino)succinic acid
2387-71-5
2-{3-[(4S)-4-amino-4-carboxybutyl]carbamimidamido}butanedioic acidC10H18N4O6
290.2731
Thumb
YMDB00720L-4-hydroxyglutamic semialdehyde(2S,4R)-2-amino-4-hydroxy-5-oxopentanoic acidC5H9NO4
147.1293
Thumb
YMDB00723trans-4-hydroxy-L-proline
51-35-4
(2S,4R)-4-hydroxypyrrolidine-2-carboxylic acidC5H9NO3
131.1299
Thumb
YMDB00738N-Acetylputrescine
18233-70-0
N-(4-aminobutyl)acetamideC6H14N2O
130.1882
Thumb
YMDB00896L-Aspartic acid
56-84-8
(2S)-2-aminobutanedioic acidC4H7NO4
133.1027
Thumb
YMDB00903D-Proline
344-25-2
(2R)-pyrrolidine-2-carboxylic acidC5H9NO2
115.1305
Thumb
YMDB00912Carbon dioxide
124-38-9
methanedioneCO2
44.0095
Thumb
YMDB00918l-Glutamic-gamma-semialdehyde
496-92-4
(2S)-2-amino-5-oxopentanoic acidC5H9NO3
131.1299
Thumb
YMDB00980(5-Deoxy-5-adenosyl)(3-aminopropyl)methylsulfonium
22365-13-5
{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(3-aminopropyl)methylsulfaniumC14H23N6O3S
355.436
Thumb
YMDB00982no
10102-43-9
nitrosoNO
30.0061
Thumb
YMDB01022L-aspartate 4-semialdehyde
15106-57-7
C4H6NO3
116.0953
Thumb
YMDB010264-acetamidobutanoate
3025-96-5
C6H10NO3
144.1485
Thumb
YMDB01033Glyoxylate
298-12-4
C2HO3
73.0275
Thumb
YMDB01038fumarate(2-)
110-17-8
C4H2O4
114.0563
Thumb
YMDB01053pyruvate
127-17-3
C3H3O3
87.0541
Thumb
YMDB01059gamma-Aminobutyrate
56-12-2
C4H8NO2
102.1118
Thumb
YMDB01074N-acetyl-L-glutamate(2-)
1188-37-0
C7H9NO5
187.1501
Thumb

Pathway Proteins

Uniprot ID Gene Name
Locus
Name Type Metabolites
P32288GLN1
YPR035W
Glutamine synthetaseEnzyme
P32528DUR1
YBR208C
Urea amidolyaseEnzyme
P00812CAR1
YPL111W
ArginaseEnzyme
P46367ALD4
YOR374W
Potassium-activated aldehyde dehydrogenase, mitochondrialEnzyme
P54115ALD6
YPL061W
Magnesium-activated aldehyde dehydrogenase, cytosolicEnzyme
P18544ARG8
YOL140W
Acetylornithine aminotransferase, mitochondrialEnzyme
Q04728ARG7
YMR062C
Arginine biosynthesis bifunctional protein ArgJ, mitochondrialEnzyme
P40360ARG2
YJL071W
Amino-acid acetyltransferase, mitochondrialEnzyme
Q01217ARG5
YER069W
Protein ARG5,6, mitochondrialEnzyme
P22768ARG1
YOL058W
Argininosuccinate synthaseEnzyme
P04076ARG4
YHR018C
Argininosuccinate lyaseEnzyme
P05150ARG3
YJL088W
Ornithine carbamoyltransferaseEnzyme
Q12178FCY1
YPR062W
Cytosine deaminaseEnzyme
P33327GDH2
YDL215C
NAD-specific glutamate dehydrogenaseEnzyme
P39708GDH3
YAL062W
NADP-specific glutamate dehydrogenase 2Enzyme
P07262GDH1
YOR375C
NADP-specific glutamate dehydrogenase 1Enzyme
P22580AMD2
YDR242W
Probable amidaseEnzyme
P32264PRO1
YDR300C
Glutamate 5-kinaseEnzyme
P22281ALD1
Aldehyde dehydrogenase 1, mitochondrialEnzyme
Q12455SPE4
YLR146C
Spermine synthaseEnzyme
Q12074SPE3
YPR069C
Spermidine synthaseEnzyme
P21182SPE2
YOL052C
S-adenosylmethionine decarboxylase proenzymeEnzyme
P08432SPE1
YKL184W
Ornithine decarboxylaseEnzyme
P07275PUT2
YHR037W
Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrialEnzyme
P09368PUT1
YLR142W
Proline dehydrogenase, mitochondrialEnzyme
P32263PRO3
YER023W
Pyrroline-5-carboxylate reductaseEnzyme
P54885PRO2
YOR323C
Gamma-glutamyl phosphate reductaseEnzyme
Q01802AAT1
YKL106W
Aspartate aminotransferase, mitochondrialEnzyme
P23542AAT2
YLR027C
Aspartate aminotransferase, cytoplasmicEnzyme
P07991CAR2
YLR438W
Ornithine aminotransferaseEnzyme