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Methane metabolism

SourceIDPathway
KEGG00680 Map00680

Pathway Metabolites

YMDB ID Name
CAS Number
IUPAC Name Formula
Weight
Structure
YMDB00016Glycine
56-40-6
2-aminoacetic acidC2H5NO2
75.0666
Thumb
YMDB00018Dihydroxyacetone
96-26-4
1,3-dihydroxypropan-2-oneC3H6O3
90.0779
Thumb
YMDB00020Sodium
7440-23-5
sodium(1+) ionNa
22.98976928
Thumb
YMDB00033Glyoxylic acid
298-12-4
2-oxoacetic acidC2H2O3
74.0355
Thumb
YMDB00056Acetic acid
64-19-7
acetic acidC2H4O2
60.052
Thumb
YMDB00076DL-O-Phosphoserine
17885-08-4
2-amino-3-(phosphonooxy)propanoic acidC3H8NO6P
185.0725
Thumb
YMDB00109Adenosine triphosphate
56-65-5
({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acidC10H16N5O13P3
507.181
Thumb
YMDB00112L-Serine
56-45-1
(2S)-2-amino-3-hydroxypropanoic acidC3H7NO3
105.0926
Thumb
YMDB00115D-Glyceraldehyde 3-phosphate
142-10-9
(2-hydroxy-3-oxopropoxy)phosphonic acidC3H7O6P
170.0578
Thumb
YMDB00139Tetrahydrofolic acid
135-16-0
2-{[4-({[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]formamido}pentanedioic acidC19H23N7O6
445.4292
Thumb
YMDB001514-Hydroxyphenylpyruvic acid
156-39-8
3-hydroxy-2-oxo-3-phenylpropanoic acidC9H8O4
180.1574
Thumb
YMDB001715-Amino-6-ribitylamino uracil5-amino-6-[(2,3,4,5-tetrahydroxypentyl)amino]-1,2,3,4-tetrahydropyrimidine-2,4-dioneC9H16N4O6
276.2465
Thumb
YMDB00172S-(Hydroxymethyl)glutathione
32260-87-0
(2S)-2-amino-4-{[(1R)-1-[(carboxymethyl)carbamoyl]-2-[(hydroxymethyl)sulfanyl]ethyl]carbamoyl}butanoic acidC11H19N3O7S
337.349
Thumb
YMDB00175Pyruvic acid
127-17-3
2-oxopropanoic acidC3H4O3
88.0621
Thumb
YMDB00235Oxalacetic acid
328-42-7
2-oxobutanedioic acidC4H4O5
132.0716
Thumb
YMDB002385-Methyltetrahydrofolic acid
134-35-0
(2R)-2-[(4-{[(2-amino-5-methyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl)methyl]amino}phenyl)formamido]pentanedioic acidC20H25N7O6
459.4558
Thumb
YMDB002605,10-Methylene-THF
31690-11-6
2-({4-[(6aR)-3-amino-1-oxo-1H,2H,5H,6H,6aH,7H,8H,9H-imidazolidino[1,5-f]pteridin-8-yl]phenyl}formamido)pentanedioic acidC20H23N7O6
457.4399
Thumb
YMDB00276Phosphoenolpyruvic acid
138-08-9
2-(phosphonooxy)prop-2-enoic acidC3H5O6P
168.042
Thumb
YMDB00280(S)-Malic acid
97-67-6
(2S)-2-hydroxybutanedioic acidC4H6O5
134.0874
Thumb
YMDB00312Acetyl-CoA
72-89-9
{[(2R,3S,4R,5R)-2-({[({[(3R)-3-[(2-{[2-(acetylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-3-hydroxy-2,2-dimethylpropoxy](hydroxy)phosphoryl}oxy)(hydroxy)phosphoryl]oxy}methyl)-5-(6-amino-9H-purin-9-yl)-4-hydroxyoxolan-3-yl]oxy}phosphonic acidC23H38N7O17P3S
809.571
Thumb
YMDB00320S-Formylglutathione
50409-81-9
(2S)-2-amino-4-{[(1R)-1-[(carboxymethyl)carbamoyl]-2-(formylsulfanyl)ethyl]carbamoyl}butanoic acidC11H17N3O7S
335.334
Thumb
YMDB00321Formaldehyde
50-00-0
formaldehydeCH2O
30.026
Thumb
YMDB00322Dihydroxyacetone phosphate
57-04-5
(3-hydroxy-2-oxopropoxy)phosphonic acidC3H7O6P
170.0578
Thumb
YMDB00362Xylulose 5-phosphate
4212-65-1
{[(2R,3S)-2,3,5-trihydroxy-4-oxopentyl]oxy}phosphonic acidC5H11O8P
230.1098
Thumb
YMDB00385Formic acid
64-18-6
formic acidCH2O2
46.0254
Thumb
YMDB00393Phosphohydroxypyruvic acid
3913-50-6
2-oxo-3-(phosphonooxy)propanoic acidC3H5O7P
184.0414
Thumb
YMDB004835,6,7,8-Tetrahydrofolic acid
135-16-0
(2S)-2-[(4-{[(2-amino-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl)methyl]amino}phenyl)formamido]pentanedioic acidC19H23N7O6
445.4292
Thumb
YMDB006752-phospho-D-glyceric acid(2R)-3-hydroxy-2-(phosphonooxy)propanoic acidC3H7O7P
186.0572
Thumb
YMDB00687D-fructose 1,6-bisphosphate
488-69-7
{[(3S,4R,5R)-3,4,5-trihydroxy-2-oxo-6-(phosphonooxy)hexyl]oxy}phosphonic acidC6H14O12P2
340.1157
Thumb
YMDB007563-phospho-D-glyceric acid
820-11-1
(2R)-2-hydroxy-3-(phosphonooxy)propanoic acidC3H7O7P
186.0572
Thumb
YMDB00761O-Phospho-L-serine
407-41-0
(2S)-2-amino-3-(phosphonooxy)propanoic acidC3H8NO6P
185.0725
Thumb
YMDB007655-Amino-6-(D-ribitylamino)uracil5-amino-6-{[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]amino}-1,2,3,4-tetrahydropyrimidine-2,4-dioneC9H16N4O6
276.2465
Thumb
YMDB00848(6R)-5,10-methylenetetrahydrofolic acid
3432-99-3
(2S)-2-({4-[(6aR)-3-amino-1-oxo-1H,2H,5H,6H,6aH,7H,8H,9H-imidazolidino[1,5-f]pteridin-8-yl]phenyl}formamido)pentanedioic acidC20H23N7O6
457.4399
Thumb
YMDB00862hydron
12408-02-5
hydronH
1.00794
Thumb
YMDB00912Carbon dioxide
124-38-9
methanedioneCO2
44.0095
Thumb
YMDB00914ADP
58-64-0
[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acidC10H15N5O10P2
427.2011
Thumb
YMDB00948D-ribulose 5-phosphate
4151-19-3
{[(2R,3R)-2,3,5-trihydroxy-4-oxopentyl]oxy}phosphonic acidC5H11O8P
230.1098
Thumb
YMDB00958(4-hydroxyphenyl)pyruvic acid
156-39-8
3-(4-hydroxyphenyl)-2-oxopropanoic acidC9H8O4
180.1574
Thumb
YMDB009852-phospho-d-glycerate(2R)-3-hydroxy-2-(phosphonooxy)propanoic acidC3H7O7P
186.0572
Thumb
YMDB01010acetate
71-50-1
acetateC2H3O2
59.044
Thumb
YMDB01025formate
64-18-6
CHO2
45.0174
Thumb
YMDB01033Glyoxylate
298-12-4
2-oxoacetateC2HO3
73.0275
Thumb
YMDB01050phosphoenolpyruvate
138-08-9
2-(phosphonooxy)prop-2-enoateC3H4O6P
167.034
Thumb
YMDB01053pyruvate
127-17-3
C3H3O3
87.0541
Thumb
YMDB010843-(4-hydroxyphenyl)pyruvate
156-39-8
3-(4-hydroxyphenyl)-2-oxopropanoateC9H7O4
179.1495
Thumb
YMDB01361Cyclopentyl methanol
67-56-1
cyclopentylmethanolC6H12O
100.1589
Thumb

Pathway Proteins

Uniprot ID Gene Name
Locus
Name Type Metabolites
P37291SHM2
YLR058C
Serine hydroxymethyltransferase, cytosolicEnzyme
P37292SHM1
YBR263W
Serine hydroxymethyltransferase, mitochondrialEnzyme
P43550DAK2
YFL053W
Dihydroxyacetone kinase 2Enzyme
P54838DAK1
YML070W
Dihydroxyacetone kinase 1Enzyme
P32771SFA1
YDL168W
S-(hydroxymethyl)glutathione dehydrogenaseEnzyme
Q01574ACS1
YAL054C
Acetyl-coenzyme A synthetase 1Enzyme
P52910ACS2
YLR153C
Acetyl-coenzyme A synthetase 2Enzyme
P40510SER33
YIL074C
D-3-phosphoglycerate dehydrogenase 2Enzyme
P33330SER1
YOR184W
Phosphoserine aminotransferaseEnzyme
P16861PFK1
YGR240C
6-phosphofructokinase subunit alphaEnzyme
P16862PFK2
YMR205C
6-phosphofructokinase subunit betaEnzyme
P09201FBP1
YLR377C
Fructose-1,6-bisphosphataseEnzyme
P14540FBA1
YKL060C
Fructose-bisphosphate aldolaseEnzyme
P17255TFP1
V-type proton ATPase catalytic subunit AEnzyme
P00830ATP2
YJR121W
ATP synthase subunit beta, mitochondrialEnzyme
P22133MDH2
YOL126C
Malate dehydrogenase, cytoplasmicEnzyme
Q08911FDH1
YOR388C
Formate dehydrogenase 1Enzyme
P32419MDH3
YDL078C
Malate dehydrogenase, peroxisomalEnzyme
P0CF35FDH2
YPL275W
Putative formate dehydrogenase 2Enzyme
P42941SER2
YGR208W
Phosphoserine phosphataseEnzyme
P40363
YJL068C
S-formylglutathione hydrolaseEnzyme
P46151MET12
YPL023C
Methylenetetrahydrofolate reductase 1Enzyme
Q12007ERR1
YOR393W
Enolase-related protein 1/2Enzyme
P42222ERR3
YMR323W
Enolase-related protein 3Enzyme
P00924ENO1
YGR254W
Enolase 1Enzyme
P00925ENO2
YHR174W
Enolase 2Enzyme
P00950GPM1
YKL152C
Phosphoglycerate mutase 1Enzyme
Q99288DET1
YDR051C
Putative phosphoglycerate mutase DET1Enzyme
Q12040
YOR283W
Probable phosphoglycerate mutase YOR283WEnzyme
Q12326GPM3
YOL056W
Phosphoglycerate mutase 3Enzyme
Q12008GPM2
YDL021W
Phosphoglycerate mutase 2Enzyme
P06115CTT1
YGR088W
Catalase TEnzyme
P15202CTA1
YDR256C
Peroxisomal catalase AEnzyme
P40054SER3
YER081W
D-3-phosphoglycerate dehydrogenase 1Enzyme
P17505MDH1
Malate dehydrogenase, mitochondrialEnzyme
P53128MET13
YGL125W
Methylenetetrahydrofolate reductase 2Enzyme