{"ymdb_id":"YMDB00404","created_at":"2011-05-29T18:13:28.000Z","updated_at":"2016-09-08T18:35:27.000Z","name":"(2-trans,6-trans)-Farnesol","cas":"106-28-5","state":"Solid","melting_point":"\u003c 25 oC","description":"(2-trans,6-trans)-Farnesol is the most important of the 4 farnesol isomers. Farnesol is an acyclic sesquiterpene alcohol. It is the building block of most, and possibly all, acyclic sesquiterpenoids. Farnesol has a sweet floral perfume.","experimental_water_solubility":null,"experimental_logp_hydrophobicity":null,"location":null,"synthesis_reference":"Imai, Kunio; Marumo, Shingo. Stereochemistry of C-1 hydrogen exchange during 2,3-double bond trans-cis isomerization of farnesol by Helminthosporium sativum. Tetrahedron Letters (1974), (49/50), 4401-4.","chebi_id":"16619","hmdb_id":"HMDB04305","kegg_id":"C01126","pubchem_id":"445070","cs_id":"24841982","foodb_id":null,"wikipedia_link":"Farnesol","biocyc_id":"2-TRANS6-TRANS-FARNESOL","iupac":"(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol","traditional_iupac":"(E)-farnesol","logp":"4.1620975709999986","pka":null,"alogps_solubility":"5.87e-02 g/l","alogps_logp":"4.84","alogps_logs":"-3.58","acceptor_count":"1","donor_count":"1","rotatable_bond_count":"7","polar_surface_area":"20.23","refractivity":"74.98469999999999","polarizability":"28.69644639972201","formal_charge":"0","physiological_charge":"0","pka_strongest_basic":"-2.2170474067294528","pka_strongest_acidic":"16.33002421872553","bioavailability":"1","number_of_rings":"0","rule_of_five":"1","ghose_filter":"1","veber_rule":"1","mddr_like_rule":"0","synonyms":["(2-trans,6-trans)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol","(2E,6E)-3,7,11-Trimethyl-2,6,10-dodecatrien-1-ol","(2E,6E)-Farnesol","(E,E)-Farnesol","(E)-farnesol","2-cis,6-trans-Farnesol","2-trans,6-trans-Farnesol","2,6-Di-trans-Farnesol","3,7,11-Trimethyl-2,6,10-dodecatrien-1-ol","All-trans-Farnesol","Farnesol","Farnesol (2E,6E)","Farnesol, (E,E)-","Farnesyl alcohol","Nikkosome","trans-Farnesol","trans,trans-alpha-Farnesol","trans,trans-Farnesol"],"pathways":[],"growth_conditions":[],"references":[{"pubmed_id":21051339,"citation":"UniProt Consortium (2011). \"Ongoing and future developments at the Universal Protein Resource.\" Nucleic Acids Res 39:D214-D219."}],"proteins":[{"created_at":"2011-05-26T23:22:21.000Z","updated_at":"2011-07-22T17:54:09.000Z","name":"Repressible alkaline phosphatase","uniprot_id":"P11491","uniprot_name":"PPB_YEAST","enzyme":true,"transporter":false,"gene_name":"PHO8","num_residues":566,"molecular_weight":"63003.60156","theoretical_pi":"5.33","general_function":"Involved in catalytic activity","specific_function":"A phosphate monoester + H(2)O = an alcohol + phosphate","reactions":[{"id":1309,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2499,"direction":"\u003e","locations":"Cytoplasmic;Cytoplasm; Single-pass membrane protein (Potential).;Secreted;Vacuole membrane","altext":"A phosphate monoester + H(2)O = an alcohol + phosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":2613,"direction":"\u003e","locations":"Vacuole membrane; Single-pass membrane protein (Potential).","altext":"(2E,6E)-farnesyl diphosphate + H(2)O = (2E,6E)-farnesol + diphosphate.","export":false,"pw_reaction_id":null,"source":null},{"id":2614,"direction":"\u003e","locations":"Vacuole membrane; Single-pass membrane protein (Potential).","altext":"beta-D-fructose 2,6-bisphosphate + H2O = beta-D-fructofuranose 2-phosphate + phosphate","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"34-59","pdb_id":null,"cellular_location":"Vacuole membrane; Single-pass membrane protein (Potential).","genbank_gene_id":"M21134","genbank_protein_id":"172164","gene_card_id":"PHO8","chromosome_location":"chromosome 4","locus":"YDR481C","synonyms":[],"enzyme_classes":["3.1.3.1","3.1.7.6","3.1.3.54"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" hydrolase activity"},{"category":"Function","description":" hydrolase activity, acting on ester bonds"},{"category":"Function","description":" phosphoric ester hydrolase activity"},{"category":"Function","description":" phosphatase activity"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"Alk_phosphatase","identifier":"PF00245"}],"pathways":[{"name":"Folate biosynthesis","kegg_map_id":"00790"}],"gene_sequence":"ATGATGACTCACAGATTACCAAGCGAACAGACACGTCTTGTTCCTGGATCTGACTCGAGCTCTCGTCCTAAAAAGAGACGGATCTCGAAGAGATCGAAGATAATAGTATCCACTGTGGTCTGTATTGGTTTGTTGCTGGTTTTAGTGCAACTGGCATTTCCAACCAGTTTTGCTATACGTTCTGCATCACACAAGAAGAAGAATGTCATATTCTTCGTGACGGATGGAATGGGACCTGCGTCTTTGTCCATGGCAAGATCATTCAACCAGCACGTTAATGATCTACCTATAGACGACATCCTGACACTTGACGAGCATTTTATCGGGTCTTCGAGAACAAGGTCCTCGGACTCACTAGTCACTGACTCAGCTGCGGGCGCCACCGCATTTGCATCTGCATTAAAGAGCTATAATGGGGCCATCGGCGTTGATCCGCATCACAGACCTTGTGGTACAGTGCTCGAGGCGGCTAAGTTAGCAGGTTATCTCACTGGGCTTGTTGTTACGACAAGAATCACAGATGCCACTCCGGCTTCATTCAGTTCACATGTTGATTACAGATGGCAGGAAGATCTTATTGCTACGCACCAGTTAGGCGAATATCCTCTGGGGAGAGTAGTAGACTTACTCATGGGTGGCGGCAGGAGCCATTTCTACCCTCAAGGCGAAAAGGCTTCTCCATATGGTCACCACGGTGCTAGAAAAGATGGAAGAGATTTAATCGATGAGGCTCAATCTAATGGCTGGCAGTACGTGGGTGACCGTAAAAATTTTGATTCTTTGTTGAAAAGCCACGGTGAAAACGTTACTTTTCCTTTCTTGGGTCTCTTTGCAGATAACGACATTCCTTTTGAAATTGACAGAGATGAAAAGGAGTATCCTTCTCTTAAGGAACAAGTCAAGGTGGCTTTGGGTGCCTTGGAAAAAGCTTCCAATGAGGACAAAGATTCTAATGGGTTTTTCTTAATGGTGGAAGGCTCCAGAATTGACCACGCTGGTCACCAAAACGATCCAGCTTCACAGGTAAGGGAGGTGTTGGCTTTCGATGAAGCATTCCAATACGTTTTGGAGTTTGCTGAAAATTCCGATACGGAGACTGTTTTGGTCTCTACGTCGGATCATGAAACGGGTGGTTTAGTCACTTCAAGACAAGTCACTGCTAGCTATCCTCAGTATGTCTGGTATCCACAGGTGCTTGCCAACGCCACCCATTCAGGTGAGTTTTTGAAAAGAAAACTAGTAGATTTTGTTCATGAACATAAGGGCGCAAGCAGCAAAATAGAAAATTTCATCAAACATGAGATCCTGGAAAAGGATTTGGGCATTTACGATTACACGGAAAGTGATTTAGAAACATTAATTCATTTGGATGACAACGCAAATGCTATCCAAGACAAACTGAATGACATGGTATCATTTAGGGCCCAAATTGGCTGGACCACGCATGGTCACAGCGCAGTCGACGTCAACATATATGCATACGCCAATAAGAAAGCTACATGGTCATATGTCTTGAACAATTTACAAGGCAATCACGAAAATACGGAAGTTGGCCAGTTCTTAGAAAACTTTTTAGAATTGAACCTGAACGAAGTCACTGATTTGATTAGGGACACCAAACACACATCAGATTTTGATGCTACAGAAATAGCTAGTGAAGTACAACATTATGACGAATACTACCATGAGTTGACCAACTGA","protein_sequence":"MMTHTLPSEQTRLVPGSDSSSRPKKRRISKRSKIIVSTVVCIGLLLVLVQLAFPSSFALRSASHKKKNVIFFVTDGMGPASLSMARSFNQHVNDLPIDDILTLDEHFIGSSRTRSSDSLVTDSAAGATAFACALKSYNGAIGVDPHHRPCGTVLEAAKLAGYLTGLVVTTRITDATPASFSSHVDYRWQEDLIATHQLGEYPLGRVVDLLMGGGRSHFYPQGEKASPYGHHGARKDGRDLIDEAQSNGWQYVGDRKNFDSLLKSHGENVTLPFLGLFADNDIPFEIDRDEKEYPSLKEQVKVALGALEKASNEDKDSNGFFLMVEGSRIDHAGHQNDPASQVREVLAFDEAFQYVLEFAENSDTETVLVSTSDHETGGLVTSRQVTASYPQYVWYPQVLANATHSGEFLKRKLVDFVHEHKGASSKIENFIKHEILEKDLGIYDYTDSDLETLIHLDDNANAIQDKLNDMVSFRAQIGWTTHGHSAVDVNIYAYANKKATWSYVLNNLQGNHENTEVGQFLENFLELNLNEVTDLIRDTKHTSDFDATEIASEVQHYDEYYHELTN"}]}