{"ymdb_id":"YMDB00127","created_at":"2011-05-29T15:59:27.000Z","updated_at":"2016-10-18T17:11:18.000Z","name":"Uridine","cas":"58-96-8","state":"Solid","melting_point":"163 oC","description":"Uridine is a pyrimidine nucleoside. It is formed by a molecule of uracil attached to a ribose sugar molecule. Uridine is the RNA nucleoside U.","experimental_water_solubility":null,"experimental_logp_hydrophobicity":"-1.98 [HANSCH,C ET AL. (1995)]","location":"extracellular;cytoplasm","synthesis_reference":"Doi, Muneharu; Asahi, Satoru; Izawa, Motoo.  Fermentative production of uridine and cytidine.    Baiosaiensu to Indasutori  (1993),  51(12),  972-6. ","chebi_id":"16704","hmdb_id":"HMDB00296","kegg_id":"C00299","pubchem_id":"6029","cs_id":"5807","foodb_id":null,"wikipedia_link":"Uridine","biocyc_id":"URIDINE","iupac":"1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2,3,4-tetrahydropyrimidine-2,4-dione","traditional_iupac":"uridine","logp":"-2.415242141666667","pka":"12.620123384629313","alogps_solubility":"1.35e+02 g/l","alogps_logp":"-1.84","alogps_logs":"-0.26","acceptor_count":"6","donor_count":"4","rotatable_bond_count":"2","polar_surface_area":"119.32999999999998","refractivity":"52.56559999999999","polarizability":"21.809000940587058","formal_charge":"0","physiological_charge":"0","pka_strongest_basic":"-2.9802996389517045","pka_strongest_acidic":"9.700740441527786","bioavailability":"1","number_of_rings":"2","rule_of_five":"1","ghose_filter":"0","veber_rule":"0","mddr_like_rule":"0","synonyms":["1-b-D-Ribofuranosyl-2,4(1H,3H)-pyrimidinedione","1-b-D-Ribofuranosyluracil","1-beta-delta-Ribofuranosyl-2,4(1H,3H)-pyrimidinedione","1-beta-delta-Ribofuranosyluracil","b-D-Ribofuranoside 2,4(1H,3H)-pyrimidinedione-1","b-Uridine","beta-delta-Ribofuranoside 2,4(1H,3H)-pyrimidinedione-1","beta-Uridine","Uridin"],"pathways":[{"name":"Pyrimidine metabolism","kegg_map_id":"00240"}],"growth_conditions":[{"growth_media":"hops, malted barley","concentration":"553.0","concentration_units":"\u0026#181;M","error":"61.0"}],"references":[{"pubmed_id":21051339,"citation":"UniProt Consortium (2011). \"Ongoing and future developments at the Universal Protein Resource.\" Nucleic Acids Res 39:D214-D219."},{"pubmed_id":21062828,"citation":"Scheer, M., Grote, A., Chang, A., Schomburg, I., Munaretto, C., Rother, M., Sohngen, C., Stelzer, M., Thiele, J., Schomburg, D. (2011). \"BRENDA, the enzyme information system in 2011.\" Nucleic Acids Res 39:D670-D676."},{"pubmed_id":18846089,"citation":"Herrgard, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Bluthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novere, N., Li, P., Liebermeister, W., Mo, M. L., Oliveira, A. P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasic, I., Weichart, D., Brent, R., Broomhead, D. S., Westerhoff, H. V., Kirdar, B., Penttila, M., Klipp, E., Palsson, B. O., Sauer, U., Oliver, S. G., Mendes, P., Nielsen, J., Kell, D. B. (2008). \"A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.\" Nat Biotechnol 26:1155-1160."},{"pubmed_id":16754,"citation":"Magni, G., Santarelli, I., Natalini, P., Ruggieri, S., Vita, A. (1977). \"Catabolite inactivation of bakers'-yeast uridine nucleosidase. Isolation and partial purification of a specific proteolytic inactivase.\" Eur J Biochem 75:77-82."},{"pubmed_id":16448171,"citation":"Almeida, C., Duarte, I. F., Barros, A., Rodrigues, J., Spraul, M., Gil, A. M. (2006). \"Composition of beer by 1H NMR spectroscopy: effects of brewing site and date of production.\" J Agric Food Chem 54:700-706."},{"pubmed_id":11934891,"citation":"Nakanishi, T., Sekimizu, K. (2002). \"SDT1/SSM1, a multicopy suppressor of S-II null mutant, encodes a novel pyrimidine 5'-nucleotidase.\" J Biol Chem 277:22103-22106."},{"pubmed_id":10827169,"citation":"Vickers, M. F., Yao, S. Y., Baldwin, S. A., Young, J. D., Cass, C. E. (2000). \"Nucleoside transporter proteins of Saccharomyces cerevisiae. Demonstration of a transporter (FUI1) with high uridine selectivity in plasma membranes and a transporter (FUN26) with broad nucleoside selectivity in intracellular membranes.\" J Biol Chem 275:25931-25938."}],"proteins":[{"created_at":"2011-05-26T16:37:26.000Z","updated_at":"2011-05-26T16:37:26.000Z","name":"Putative uridine kinase YDR020C","uniprot_id":"Q12084","uniprot_name":"YD020_YEAST","enzyme":true,"transporter":false,"gene_name":null,"num_residues":232,"molecular_weight":"26594.80078","theoretical_pi":"4.57","general_function":"Involved in ATP binding","specific_function":"ATP + uridine = ADP + UMP","reactions":[{"id":2433,"direction":"\u003e","locations":"Cytoplasm. Nucleus","altext":"ATP + uridine = ADP + UMP.","export":false,"pw_reaction_id":null,"source":null},{"id":2434,"direction":"\u003e","locations":"Cytoplasm. Nucleus","altext":"ATP + cytidine = ADP + CMP.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm. Nucleus","genbank_gene_id":"AY558571","genbank_protein_id":"45271032","gene_card_id":null,"chromosome_location":null,"locus":"YDR020C","synonyms":[],"enzyme_classes":["2.7.1.48"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" transferase activity, transferring phosphorus-containing groups"},{"category":"Function","description":" binding"},{"category":"Function","description":" nucleoside binding"},{"category":"Function","description":" purine nucleoside binding"},{"category":"Function","description":" adenyl nucleotide binding"},{"category":"Function","description":" adenyl ribonucleotide binding"},{"category":"Function","description":" ATP binding"},{"category":"Function","description":" kinase activity"},{"category":"Function","description":" phosphotransferase activity, alcohol group as acceptor"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"PRK","identifier":"PF00485"}],"pathways":[{"name":"Pyrimidine metabolism","kegg_map_id":"00240"}],"gene_sequence":"ATGGACAGAAAAGCTGTCGAAGAAAAAAGAATTGTTATTTCTATCGGTGGAGGGCATGCTACTGGTGTTGGAGCAATTGCACTGGATTTACAAAATACTTTCAAAAGCCTATATAACTCTATCAATATAAGGGTAATAAACCTAGATAATATGATAGAAGGGAACATCAAGAGCTACAATAATAACGACTATGATTTTGATAATATCCTTAATTTGGTATATGAAAAGCACGCTGTAACTTCTCAAAATGACATGATTCAACATGATTACGAGGACCCGATAGATTTGATAATAGTATGTGGCTGTTATGCGCTATACGATAAACGCATCAACGAAATATCTCAATTAAAGGTATTCTTGGATAGTGATGCAGATAAAAGATTAATTAGTCTAATCAAGAAGAAGAACGTAGGGAGCAATGAACAACTAGCCCAGTTGATCACTGAGTATATGGACCATCTGCGCCCGGAGATGCAACAATATATAGAGCCCACTAGAACTTTTGCAGATTTGATCATTCCTTCTACAAATGAAAATCTAGGGCGCGCAGTCCTCGTGGACGGTATAGTTAAAGCAATCGAAGATACCAAAAGCCAAATAGAAGGCAACAATACGAACAACAAAATACGCCCACGTTTATGGGATTTCGAAGCTGAAACAATGGACTTGGAGAAAGATAGATATTACGATCTGTCATGA","protein_sequence":"MDRKAVEEKRIVISIGGGHATGVGAIALDLQNTFKSLYNSINIRVINLDNMIEGNIKSYNNNDYDFDNILNLVYEKHAVTSQNDMIQHDYEDPIDLIIVCGCYALYDKRINEISQLKVFLDSDADKRLISLIKKKNVGSNEQLAQLITEYMDHLRPEMQQYIEPTRTFADLIIPSTNENLGRAVLVDGIVKAIEDTKSQIEGNNTNNKIRPRLWDFEAETMDLEKDRYYDLS"},{"created_at":"2011-05-26T16:39:47.000Z","updated_at":"2011-07-22T17:53:50.000Z","name":"Suppressor of disruption of TFIIS","uniprot_id":"P53078","uniprot_name":"SDT1_YEAST","enzyme":true,"transporter":false,"gene_name":"SDT1","num_residues":280,"molecular_weight":"31968.40039","theoretical_pi":"6.35","general_function":"Involved in catalytic activity","specific_function":"Could be an enzyme that inactivates 6-azauracil by modifying it","reactions":[{"id":1202,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1210,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasmic","genbank_gene_id":"AY692802","genbank_protein_id":"51013055","gene_card_id":"SDT1","chromosome_location":"chromosome 7","locus":"YGL224C","synonyms":[],"enzyme_classes":[],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" hydrolase activity"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"Hydrolase","identifier":"PF00702"}],"pathways":[],"gene_sequence":"ATGACTGTTGAATATACTGCATCCGATTTGGCAACCTATCAGAATGAGGTGAACGAACAAATTGCCAAGAATAAAGCACATCTTGAATCATTGACTCATCCAGGTTCGAAAGTGACATTTCCGATCGATCAAGATATTTCTGCTACACCTCAAAACCCGAACTTAAAAGTTTTCTTTTTTGATATCGACAACTGTCTCTATAAATCATCCACGAGAATTCACGATCTTATGCAACAATCTATACTGAGGTTCTTTCAAACACACTTGAAACTATCACCTGAAGATGCTCACGTTTTGAATAACTCTTACTACAAAGAGTATGGACTTGCCATAAGGGGACTTGTAATGTTCCACAAAGTGAACGCACTGGAATATAACCGGCTTGTGGATGATTCCTTACCACTACAAGATATCTTGAAACCTGATATACCATTAAGGAATATGCTGTTGAGATTGAGACAATCGGGAAAGATTGATAAATTGTGGCTTTTCACCAACGCTTATAAAAACCACGCAATACGTTGCCTGAGATTGTTGGGTATAGCGGATTTATTTGATGGATTGACATATTGTGACTACTCTAGGACAGATACGCTGGTCTGCAAACCACATGTTAAAGCATTTGAAAAAGCCATGAAGGAAAGCGGGTTGGCAAGATACGAGAATGCTTATTTTATAGATGACAGTGGGAAAAACATCGAGACAGGTATCAAATTGGGCATGAAAACATGTATTCATTTAGTTGAGAATGAAGTAAATGAAATTTTGGGGCAAACACCAGAAGGCGCTATTGTCATTAGTGATATATTGGAGTTACCACACGTTGTGTCCGACCTGTTCTAA","protein_sequence":"MTVEYTASDLATYQNEVNEQIAKNKAHLESLTHPGSKVTFPIDQDISATPQNPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGLVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELPHVVSDLF"},{"created_at":"2011-05-26T16:41:01.000Z","updated_at":"2011-07-22T17:54:33.000Z","name":"Uridine kinase","uniprot_id":"P27515","uniprot_name":"URK1_YEAST","enzyme":true,"transporter":false,"gene_name":"URK1","num_residues":501,"molecular_weight":"56295.5","theoretical_pi":"7.8","general_function":"Involved in ATP binding","specific_function":"Catalyzes the conversion of uridine into UMP and cytidine into CMP in the pyrimidine salvage pathway","reactions":[{"id":1425,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2037,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2038,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2433,"direction":"\u003e","locations":"Cytoplasm. Nucleus","altext":"ATP + uridine = ADP + UMP.","export":false,"pw_reaction_id":null,"source":null},{"id":2434,"direction":"\u003e","locations":"Cytoplasm. Nucleus","altext":"ATP + cytidine = ADP + CMP.","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm. Nucleus","genbank_gene_id":"X53998","genbank_protein_id":"4773","gene_card_id":"URK1","chromosome_location":"chromosome 14","locus":"YNR012W","synonyms":["Uridine monophosphokinase"],"enzyme_classes":["2.7.1.48"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" transferase activity, transferring phosphorus-containing groups"},{"category":"Function","description":" binding"},{"category":"Function","description":" nucleoside binding"},{"category":"Function","description":" purine nucleoside binding"},{"category":"Function","description":" adenyl nucleotide binding"},{"category":"Function","description":" adenyl ribonucleotide binding"},{"category":"Function","description":" ATP binding"},{"category":"Function","description":" kinase activity"},{"category":"Function","description":" phosphotransferase activity, alcohol group as acceptor"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" transferase activity"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"PRK","identifier":"PF00485"}],"pathways":[{"name":"Pyrimidine metabolism","kegg_map_id":"00240"}],"gene_sequence":"ATGTCCCATCGTATAGCACCTTCCAAAGAACGATCTTCATCATTTATTTCAATTTTAGACGATGAAACAAGAGACACATTGAAAGCTAATGCAGTCATGGATGGTGAAGTAGATGTCAAAAAAACAAAAGGAAAAAGCTCTCGGTATATCCCACCATGGACAACTCCATATATAATAGGTATAGGTGGTGCTTCAGGTTCAGGCAAGACAAGCGTTGCTGCTAAGATTGTGTCGTCAATTAATGTTCCCTGGACAGTATTAATATCTTTGGATAACTTTTACAATCCATTAGGCCCAGAGGACAGAGCCAGAGCCTTTAAAAATGAATACGATTTCGACGAGCCAAATGCCATCAACTTAGATTTGGCATATAAGTGCATTTTGAACTTAAAGGAGGGCAAAAGGACAAATATCCCAGTTTATAGCTTCGTCCACCACAATAGAGTTCCTGATAAAAATATAGTCATATACGGGGCCAGTGTGGTAGTTATCGAAGGGATCTACGCCCTTTACGATCGCCGATTGCTGGATTTGATGGACTTGAAAATTTATGTTGACGCTGATTTGGATGTCTGCTTAGCAAGAAGATTGTCGAGAGATATAGTTTCCAGAGGGAGAGATTTGGATGGTTGTATTCAACAATGGGAGAAATTTGTGAAACCAAATGCGGTAAAGTTTGTGAAACCAACAATGAAGAATGCAGATGCTATCATTCCATCGATGAGTGATAATGCTACAGCGGTAAATTTAATCATTAACCACATCAAGTCAAAACTGGAACTAAAATCAAATGAACACTTAAGAGAGCTAATCAAATTGGGCTCTTCTCCTTCACAAGATGTGCTTAATCGTAACATAATTCATGAATTGCCGCCCACCAACCAAGTTCTTTCGCTGCATACTATGCTTCTAAATAAAAATCTAAATTGCGCGGACTTTGTTTTCTACTTTGACAGGTTAGCAACAATTTTGTTATCATGGGCACTTGATGACATTCCTGTAGCACATACGAACATAATTACACCTGGTGAGCATACCATGGAAAACGTTATTGCCTGTCAATTCGATCAAGTTACAGCTGTTAATATTATTCGATCTGGCGATTGTTTTATGAAGTCTTTGAGAAAGACGATCCCCAATATCACAATTGGTAAATTGTTGATTCAGTCCGATTCACAAACTGGGGAACCTCAACTGCATTGCGAATTTTTACCCCCAAATATAGAAAAGTTTGGCAAGGTTTTCTTAATGGAAGGTCAAATCATAAGTGGTGCGGCCATGATCATGGCCATCCAGGTGCTTTTAGATCATGGTATTGATTTGGAAAAGATTAGCGTGGTGGTTTATTTGGCCACTGAAGTTGGTATCCGACGTATATTAAATGCATTTGATAACAAAGTCAACATTTTTGCTGGTATGATCATCTCCAGAGAAAAGTTACAAAATCATCAATACAAATGGGCATTGACCAGATTTTTTGATTCAAAGTATTTTGGTTGTGATTGA","protein_sequence":"MSHRIAPSKERSSSFISILDDETRDTLKANAVMDGEVDVKKTKGKSSRYIPPWTTPYIIGIGGASGSGKTSVAAKIVSSINVPWTVLISLDNFYNPLGPEDRARAFKNEYDFDEPNAINLDLAYKCILNLKEGKRTNIPVYSFVHHNRVPDKNIVIYGASVVVIEGIYALYDRRLLDLMDLKIYVDADLDVCLARRLSRDIVSRGRDLDGCIQQWEKFVKPNAVKFVKPTMKNADAIIPSMSDNATAVNLIINHIKSKLELKSNEHLRELIKLGSSPSQDVLNRNIIHELPPTNQVLSLHTMLLNKNLNCADFVFYFDRLATILLSWALDDIPVAHTNIITPGEHTMENVIACQFDQVTAVNIIRSGDCFMKSLRKTIPNITIGKLLIQSDSQTGEPQLHCEFLPPNIEKFGKVFLMEGQIISGAAMIMAIQVLLDHGIDLEKISVVVYLATEVGIRRILNAFDNKVNIFAGMIISREKLQNHQYKWALTRFFDSKYFGCD"},{"created_at":"2011-05-26T16:42:13.000Z","updated_at":"2011-07-22T17:54:35.000Z","name":"Cytidine deaminase","uniprot_id":"Q06549","uniprot_name":"CDD_YEAST","enzyme":true,"transporter":false,"gene_name":"CDD1","num_residues":142,"molecular_weight":"15535.90039","theoretical_pi":"7.22","general_function":"Involved in zinc ion binding","specific_function":"This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis","reactions":[{"id":1424,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1442,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2439,"direction":"\u003e","locations":"Cytoplasmic","altext":"Cytidine + H(2)O = uridine + NH(3).","export":false,"pw_reaction_id":null,"source":null}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":"1R5T","cellular_location":"Cytoplasmic","genbank_gene_id":"AF080089","genbank_protein_id":"4140396","gene_card_id":"CDD1","chromosome_location":"chromosome 12","locus":"YLR245C","synonyms":["CDA","Cytidine aminohydrolase"],"enzyme_classes":["3.5.4.5"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" binding"},{"category":"Function","description":" ion binding"},{"category":"Function","description":" cation binding"},{"category":"Function","description":" metal ion binding"},{"category":"Function","description":" transition metal ion binding"},{"category":"Function","description":" zinc ion binding"},{"category":"Function","description":" hydrolase activity"},{"category":"Function","description":" hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"},{"category":"Function","description":" catalytic activity"},{"category":"Function","description":" hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines"},{"category":"Function","description":" cytidine deaminase activity"},{"category":"Process","description":" nitrogen compound metabolic process"},{"category":"Process","description":" pyrimidine nucleoside metabolic process"},{"category":"Process","description":" cellular nitrogen compound metabolic process"},{"category":"Process","description":" pyrimidine ribonucleoside metabolic process"},{"category":"Process","description":" nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"},{"category":"Process","description":" cytidine metabolic process"},{"category":"Process","description":" nucleobase, nucleoside and nucleotide metabolic process"},{"category":"Process","description":" nucleoside metabolic process"},{"category":"Process","description":" metabolic process"}],"pfams":[{"name":"dCMP_cyt_deam_1","identifier":"PF00383"}],"pathways":[{"name":"Pyrimidine metabolism","kegg_map_id":"00240"}],"gene_sequence":"ATGAAAGTAGGTGGCATAGAAGACAGACAACTGGAAGCCTTAAAAAGGGCGGCACTGAAGGCGTGTGAACTCTCCTATAGCCCCTATTCTCACTTCCGTGTCGGTTGTTCCATATTAACAAATAACGATGTTATCTTCACTGGTGCTAATGTCGAGAATGCAAGCTACAGTAATTGTATATGTGCAGAACGATCTGCTATGATACAAGTTCTAATGGCAGGCCATCGCTCAGGATGGAAATGCATGGTCATTTGTGGCGATTCTGAGGACCAGTGTGTTTCCCCTTGCGGCGTTTGCAGGCAGTTTATCAATGAATTTGTGGTCAAGGACTTTCCAATAGTCATGCTTAATTCCACAGGTTCTCGTTCTAAAGTCATGACAATGGGAGAACTGCTGCCCATGGCTTTTGGTCCATCTCATTTAAACTAG","protein_sequence":"MKVGGIEDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRSKVMTMGELLPMAFGPSHLN"},{"created_at":"2011-05-27T02:17:23.000Z","updated_at":"2011-05-27T15:01:17.000Z","name":"Uridine permease","uniprot_id":"P38196","uniprot_name":"FUI1_YEAST","enzyme":false,"transporter":true,"gene_name":"FUI1","num_residues":639,"molecular_weight":"72164.39844","theoretical_pi":"7.58","general_function":"Involved in nucleobase transmembrane transporter activity","specific_function":"High-affinity transport of uridine","reactions":[],"signal_regions":"None","transmembrane_regions":"163-180;201-225;260-276;284-305;368-392;417-435;461-477;484-507;538-562;573-590","pdb_id":null,"cellular_location":"Membrane; Multi-pass membrane protein","genbank_gene_id":"X78214","genbank_protein_id":"872301","gene_card_id":"FUI1","chromosome_location":"chromosome 2","locus":"YBL042C","synonyms":[],"enzyme_classes":[],"go_classes":[{"category":"Component","description":" cell part"},{"category":"Component","description":" membrane"},{"category":"Function","description":" transporter activity"},{"category":"Function","description":" transmembrane transporter activity"},{"category":"Function","description":" substrate-specific transmembrane transporter activity"},{"category":"Function","description":" nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity"},{"category":"Function","description":" nucleobase transmembrane transporter activity"},{"category":"Process","description":" transmembrane transport"},{"category":"Process","description":" establishment of localization"},{"category":"Process","description":" transport"},{"category":"Process","description":" nucleobase, nucleoside, nucleotide and nucleic acid transport"}],"pfams":[{"name":"Transp_cyt_pur","identifier":"PF02133"}],"pathways":[],"gene_sequence":"ATGCCGGTATCTGATTCTGGATTCGATAATTCTTCAAAAACAATGAAGGACGACACTATACCGACGGAGGATTACGAAGAAATCACGAAAGAGTCCGAGATGGGTGATGCGACTAAAATTACTTCTAAGATTGATGCTAATGTCATTGAAAAAAAAGATACCGATTCAGAAAACAATATAACCATTGCTCAGGATGACGAAAAGGTGTCTTGGCTGCAAAGAGTTGTCGAGTTTTTTGAGGTTAAGAATGACTCTACCGATTTGGCCGATCATAAGCCCGAAAATCCAATTAGGACATTTAAAGATTTACAGGAGTCCCTCCGTTCGACGTACTTGTACAACACAGATCTGCGGCCCGTGGAGGCAAAAAGAAGAACGTGGACATGGAAGCAGTACATTTTCTTTTGGATTTCTGGGTCCTTTAACGTCAATACATGGCAAATCTCAGCCACTGGGCTACAGTTAGGGCTTAACTGGTGGCAGACTTGGATCTGTATTTGGGTTGGATACACGTTTGTCGCATTTTTCTTGATACTGGGTTCCAAAGTGGGGAACAATTACCATATCTCTTTCCCCATTTCCTCAAGAGTATCATTTGGTATCTACTTCTCCATCTGGATTGTCATCAACCGTGTCGTCATGGCATGTGTCTGGAATTCTACTTTGGCTTATATCGGTAGTCAATGTGTTCAGTTGATGCTAAAGGCTATCTTCGGTACTAATTTGAATACTAGAATCAAAGACACCATAAAGAACCCCAATTTGACGAACTTCGAGTTCATGTGCTTCATGGTCTTCTGGGTCGCATGTTTACCGTTCCTATGGTTTCCACCTGACAAATTGCGTCATATATTTGCACTCAAATCCGCCATCACTCCATTTGCGGCCTTCGGTTTTTTGATTTGGACTCTTTGTAAGGCCAAAGGTCATTTGGCATTGGGTTCCCTAAATGACAATGGTGGCGCAATCAGCAAGACGGTTTTAGCATGGTCTGTCATTAGAGCTATTATGAGTGCTCTGGATAACTTCTCTACTTTAATCCTAAACGCTCCTGACTTCACTAGATTCGGTAAGACCTACAAGTCATCTGTTTACTCGCAATTGATTGCGCTACCCGTCTGCTATGCCATTATTTCCTTAATCGGAATATTGTCTGTCTCCGCAGCTTATACATTGTACGGAGTAAATTATTGGAGTCCCCTAGACATTCTGAACAGGTACTTGGATAACTATACTTCGGGGAACAGAGCCGGTGTATTCTTAATATCTTTCATTTTTGCGTTTGACCAGCTGGGTGCCAACTTGTCTGGTAACTCGATCCCTGCAGGTACCGATCTGACTGCATTATTGCCTAAATTCATCAATATCAGACGCGGTTCTTATATTTGTGCTCTAATATCGTTGGCGATTTGCCCCTGGGATTTATTATCATCATCGTCAAAGTTTACTACGGCACTAGCGGCATATGCAGTTTTCTTAAGTGCTATTGCGGGTGTAATATCAGCCGATTACTTCATTGTCAGAAAGGGTTACGTTAATATTTTCCATTGCTACACCGACAAGCCAGGATCGTACTACATGTACAATAAATATGGTACGAACTGGAGGGCGGTGGTAGCTTATATATTTGGTATTGCTCCTAATTTTGCAGGCTTTTTAGGTTCAGTGGGAGTTTCTGTGCCTATTGGCGCTATGAAAGTTTACTACCTAAACTATTTCGTTGGTTATCTCCTTGCAGCATTGAGTTACTGCATTTTAGTGTATTTTTACCCAATTAAGGGTATTCCAGGCGATGCCAAGATAACTGACCGTAAATGGCTCGAAGAGTGGGTCGAAGTAGAAGAATTCGGAACTGAAAGAGAAGCTTTTGAAGAATATGGCGGCGTTTCCACTGGCTATGAAAAGATACGATATATCTAA","protein_sequence":"MPVSDSGFDNSSKTMKDDTIPTEDYEEITKESEMGDATKITSKIDANVIEKKDTDSENNITIAQDDEKVSWLQRVVEFFEVKNDSTDLADHKPENPIRTFKDLQESLRSTYLYNTDLRPVEAKRRTWTWKQYIFFWISGSFNVNTWQISATGLQLGLNWWQTWICIWVGYTFVAFFLILGSKVGNNYHISFPISSRVSFGIYFSIWIVINRVVMACVWNSTLAYIGSQCVQLMLKAIFGTNLNTRIKDTIKNPNLTNFEFMCFMVFWVACLPFLWFPPDKLRHIFALKSAITPFAAFGFLIWTLCKAKGHLALGSLNDNGGAISKTVLAWSVIRAIMSALDNFSTLILNAPDFTRFGKTYKSSVYSQLIALPVCYAIISLIGILSVSAAYTLYGVNYWSPLDILNRYLDNYTSGNRAGVFLISFIFAFDQLGANLSGNSIPAGTDLTALLPKFINIRRGSYICALISLAICPWDLLSSSSKFTTALAAYAVFLSAIAGVISADYFIVRKGYVNIFHCYTDKPGSYYMYNKYGTNWRAVVAYIFGIAPNFAGFLGSVGVSVPIGAMKVYYLNYFVGYLLAALSYCILVYFYPIKGIPGDAKITDRKWLEEWVEVEEFGTEREAFEEYGGVSTGYEKIRYI"},{"created_at":"2011-05-27T17:15:59.000Z","updated_at":"2011-07-22T17:53:59.000Z","name":"Uridine nucleosidase","uniprot_id":"Q04179","uniprot_name":"URH1_YEAST","enzyme":true,"transporter":false,"gene_name":"URH1","num_residues":340,"molecular_weight":"37960.0","theoretical_pi":"5.07","general_function":"Involved in hydrolase activity, hydrolyzing N-glycosyl compounds","specific_function":"Also acts on cytidine","reactions":[{"id":1269,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":1609,"direction":"\u003e","locations":"cytoplasm","altext":null,"export":true,"pw_reaction_id":null,"source":null},{"id":2835,"direction":"\u003e","locations":"Cytoplasm. Nucleus","altext":"Uridine + H(2)O = D-ribose + uracil.","export":false,"pw_reaction_id":null,"source":null},{"id":4195,"direction":"\u003e","locations":null,"altext":null,"export":true,"pw_reaction_id":"PW_R006494","source":"Smpdb"}],"signal_regions":"None","transmembrane_regions":"None","pdb_id":null,"cellular_location":"Cytoplasm. Nucleus","genbank_gene_id":null,"genbank_protein_id":null,"gene_card_id":"URH1","chromosome_location":"chromosome 4","locus":"YDR400W","synonyms":["Uridine ribohydrolase"],"enzyme_classes":["3.2.2.3"],"go_classes":[{"category":"Component","description":" Not Available"},{"category":"Function","description":" hydrolase activity"},{"category":"Function","description":" hydrolase activity, acting on glycosyl bonds"},{"category":"Function","description":" hydrolase activity, hydrolyzing N-glycosyl compounds"},{"category":"Function","description":" catalytic activity"},{"category":"Process","description":" Not Available"}],"pfams":[{"name":"IU_nuc_hydro","identifier":"PF01156"}],"pathways":[{"name":"Pyrimidine metabolism","kegg_map_id":"00240"},{"name":"NAD metabolism","kegg_map_id":null}],"gene_sequence":"ATGACTGTTAGTAAAATACCCATATGGCTAGATTGTGATCCTGGTCATGATGATGCCATAGCCATTTTATTAGGCTGTTTCCATCCAGCTTTCAATCTTCTAGGAATCAGCACGTGTTTTGGTAACGCACCGCCAGAGAATACTGACTACAACGCCCGTTCTCTTTTGACTGCGATGGGCAAAGCACAAGCGATTCCAGTTTATAAAGGCGCACAGAGACCTTGGAAAAGGGAACCTCATTATGCTCCTGACATTCATGGTATATCAGGTTTAGACGGCACTTCTTTGCTACCTAAGCCAACATTTGAGGCAAGAACTGATAAAACGTATATTGAGGCCATTGAAGAGGCGATTCTAGCTAACAATGGAGAGATATCCTTTGTGTCTACTGGTGCACTTACCACATTAGCAACAGTTTTTAGGTGTAAACCATACCTAAAAAAATCTGTCAAATATATTAGCATTATGGGGGGTGGACTCCATGGTCTAGGAAACTGTAACCCAAATCTTTCTGCTGAATTCAACGTTTGGATTGATCCTGACGCAGCGAATTACATATTCCGTGATCCCGATGTAAAGGACAAATGTATAGTAGTTCCTCTAAATTTAACTCACAAGGCCATAGCTACTTACAAGGTTAACGAAATGATATACAACGAAAAGAATAACAGCAAGTTACGAGAATTGTTTTTGGAGCTTTTTCAATTTTTTGCTCATACCTACAAGGATATGCAAGGATTTGAATCGGGCCCACCTATACATGATCCGGTAGCTTTGATGCCGCTTTTGGAATTTTATGGGTGGGATCCATCGTCTGCGGTTGGATTTCGCTACAAGAGAATGGACATATCCTGCATTGATGATGTTTTCAACGAAAACTCAGGGAAAATTATCATTGAAAAAGAATATCCAAATGACAGTGATGTTGGTACAATAATTGGTCTCGATTTGAATATCCAGTACTTTTGGGATCAGATTTTTGAAGCATTAAATAGAGCAGACAAAATGTCAACGATTGGATAA","protein_sequence":"MTVSKIPIWLDCDPGHDDAIAILLGCFHPAFNLLGISTCFGNAPPENTDYNARSLLTAMGKAQAIPVYKGAQRPWKREPHYAPDIHGISGLDGTSLLPKPTFEARTDKTYIEAIEEAILANNGEISFVSTGALTTLATVFRCKPYLKKSVKYISIMGGGLHGLGNCNPNLSAEFNVWIDPDAANYIFRDPDVKDKCIVVPLNLTHKAIATYKVNEMIYNEKNNSKLRELFLELFQFFAHTYKDMQGFESGPPIHDPVALMPLLEFYGWDPSSAVGFRYKRMDISCIDDVFNENSGKIIIEKEYPNDSDVGTIIGLDLNIQYFWDQIFEALNRADKMSTIG"}]}