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Identification
YMDB IDYMDB00020
NameSodium
SpeciesSaccharomyces cerevisiae
StrainBaker's yeast
DescriptionSodium(1+) is a monoatomic monocation obtained from sodium. Sodium is an essential element for all animal life and for some plant species.
Structure
Thumb
Synonyms
  • 11Na
  • NA
  • Na(+)
  • Na+
  • Natrium
  • Sodium
  • Sodium cation
  • Sodium ion
  • Sodium(1+)
CAS number7440-23-5
WeightAverage: 22.98976928
Monoisotopic: 22.989769675
InChI KeyFKNQFGJONOIPTF-UHFFFAOYSA-N
InChIInChI=1S/Na/q+1
IUPAC Namesodium(1+) ion
Traditional IUPAC Namesodium(1+) ion
Chemical FormulaNa
SMILES[Na+]
Chemical Taxonomy
Description belongs to the class of inorganic compounds known as homogeneous alkali metal compounds. These are inorganic compounds containing only metal atoms,with the largest atom being a alkali metal atom.
KingdomInorganic compounds
Super ClassHomogeneous metal compounds
ClassHomogeneous alkali metal compounds
Sub ClassNot Available
Direct ParentHomogeneous alkali metal compounds
Alternative ParentsNot Available
Substituents
  • Homogeneous alkali metal
Molecular FrameworkNot Available
External Descriptors
Physical Properties
StateSolid
Charge1
Melting point97.82 °C
Experimental Properties
PropertyValueReference
Water SolubilityNot AvailablePhysProp
LogPNot AvailablePhysProp
Predicted Properties
PropertyValueSource
logP-0.77ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity0 m³·mol⁻¹ChemAxon
Polarizability1.78 ųChemAxon
Number of Rings0ChemAxon
Bioavailability1ChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Biological Properties
Cellular Locations
  • cytoplasm
  • extracellular
Organoleptic PropertiesNot Available
SMPDB PathwaysNot Available
KEGG Pathways
Methane metabolismec00680 Map00680
SMPDB ReactionsNot Available
KEGG ReactionsNot Available
Concentrations
Intracellular ConcentrationsNot Available
Extracellular Concentrations
Intracellular ConcentrationSubstrateGrowth ConditionsStrainCitation
1740 ± 237 µM hops, malted barleyanaerobicBaker's yeastAlcoholic beverage, beer, regular, all - U.S. Department of Agriculture, Agricultural Research Service. 2010. USDA National Nutrient Database for Standard Reference, Release 23. Nutrient Data Laboratory Home Page
1740 ± 0 µM grape juiceanaerobicBaker's yeastAlcoholic beverage, wine, table, red - U.S. Department of Agriculture, Agricultural Research Service. 2010. USDA National Nutrient Database for Standard Reference, Release 23. Nutrient Data Laboratory Home Page
Conversion Details Here
Spectra
Spectra
References
References:
  • UniProt Consortium (2011). "Ongoing and future developments at the Universal Protein Resource." Nucleic Acids Res 39:D214-D219.21051339
  • Herrgard, M. J., Swainston, N., Dobson, P., Dunn, W. B., Arga, K. Y., Arvas, M., Bluthgen, N., Borger, S., Costenoble, R., Heinemann, M., Hucka, M., Le Novere, N., Li, P., Liebermeister, W., Mo, M. L., Oliveira, A. P., Petranovic, D., Pettifer, S., Simeonidis, E., Smallbone, K., Spasic, I., Weichart, D., Brent, R., Broomhead, D. S., Westerhoff, H. V., Kirdar, B., Penttila, M., Klipp, E., Palsson, B. O., Sauer, U., Oliver, S. G., Mendes, P., Nielsen, J., Kell, D. B. (2008). "A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology." Nat Biotechnol 26:1155-1160.18846089
  • Catty, P., de Kerchove d'Exaerde, A., Goffeau, A. (1997). "The complete inventory of the yeast Saccharomyces cerevisiae P-type transport ATPases." FEBS Lett 409:325-332.9224683
  • Benito, B., Garciadeblas, B., Rodriguez-Navarro, A. (2002). "Potassium- or sodium-efflux ATPase, a key enzyme in the evolution of fungi." Microbiology 148:933-941.11932440
  • Logg, K., Warringer, J., Hashemi, S. H., Kall, M., Blomberg, A. (2008). "The sodium pump Ena1p provides mechanistic insight into the salt sensitivity of vacuolar protein sorting mutants." Biochim Biophys Acta 1783:974-984.18395523
  • Alcoholic beverage, beer, regular, all - U.S. Department of Agriculture, Agricultural Research Service. 2010. USDA National Nutrient Database for Standard Reference, Release 23. Nutrient Data Laboratory Home Page
  • Alcoholic beverage, wine, table, red - U.S. Department of Agriculture, Agricultural Research Service. 2010. USDA National Nutrient Database for Standard Reference, Release 23. Nutrient Data Laboratory Home Page
Synthesis Reference:Not Available
External Links:
ResourceLink
CHEBI ID29101
HMDB IDHMDB00588
Pubchem Compound ID923
Kegg IDC01330
ChemSpider ID24770394
FOODB IDFDB031052
WikipediaSodium
BioCyc IDNA+

Transporters

General function:
Involved in nucleotide binding
Specific function:
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the sodium or lithium ions to allow salt tolerance. Is negatively modulated by SIS2/HAL3
Gene Name:
ENA1
Uniprot ID:
P13587
Molecular weight:
120356.0
Reactions
ATP + H(2)O + Na(+)(In) → ADP + phosphate + Na(+)(Out).
General function:
Involved in nucleotide binding
Specific function:
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of sodium or lithium ions to allow salt tolerance
Gene Name:
ENA5
Uniprot ID:
Q12691
Molecular weight:
120295.0
Reactions
ATP + H(2)O + Na(+)(In) → ADP + phosphate + Na(+)(Out).
General function:
Involved in nucleotide binding
Specific function:
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of sodium or lithiums ions to allow salt tolerance
Gene Name:
ENA2
Uniprot ID:
Q01896
Molecular weight:
120316.0
Reactions
ATP + H(2)O + Na(+)(In) → ADP + phosphate + Na(+)(Out).
General function:
Involved in sodium:hydrogen antiporter activity
Specific function:
Sodium export from cell, takes up external protons in exchange for internal sodium ions
Gene Name:
NHA1
Uniprot ID:
Q99271
Molecular weight:
109368.0